barSeed - Barley Seed Development Database

Probe CUST_36900_PI390587928

Source Contig U35_1328

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36900_PI390587928	Hv_44K_v2	AGCGGAATAAGTGAAGTGTAAACTACAGTTGCTTCATTATGGTTTTGTGTGAAAGAAGCT	984	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70429.2	1953	7e-23	1726 - 1785	98	59 / 60	plus	ABC03880 ABC03881 ABC03882 ABC03883 ABC24951
MLOC	MLOC_70429.1	2835	7e-23	2608 - 2667	98	59 / 60	plus	ABC03880 ABC03881 ABC03882 ABC03883 ABC24951
JLOC1	JLOC1_46737.1	2901	4e-23	2611 - 2670	98	59 / 60	plus
Harvest21	ABC03882	1073	3e-25	985 - 1044	100	60 / 60	plus	ABC03882
Harvest35	U35_1328	1072	3e-25	985 - 1044	100	60 / 60	plus
Harvest35	U35_32763	628	1e-23	558 - 617	98	59 / 60	plus

Contig Sequence (1072 bp)

>U35_1328 1072 Hv_44K_v2
GCCCTCCCTCCCTCGCGTCGCCCACCACAGAGCACACGAGTCGACGCGCCCCGACAGCTC
AGCTCTTTCGTCCCGTCTCGCCTCGCCTCGCCTCTCCCCCCTCCCAGCCCCTCCGGCGCG
CAAGCGAGATCGATCGCCCCGGACCCTAGATCCCGATGGCCTCGCGCCGCCGCACCCTCC
TCAAGGTCATCATCCTCGGCGACAGCGGGGTTGGGAAGACTTCCTTGATGAACCAATATG
TGAACAAGAAGTTCAGCAACCAGTACAAGGCCACGATTGGCGCCGATTTCCTCACCAAGG
AGGTGCAGTTCGAGGACAGGCTCTTCACTCTGCAAATATGGGATACTGCCGGTCAGGAGA
GGTTTCAAAGTCTTGGTGTTGCATTCTACCGTGGAGCGGATTGTTGTGTTCTAGTTTACG
ATGTTAACTCCATGAAATCATTTGATAATCTGAACAACTGGCGTGAAGAGTTTCTAATTC
AGGCTAGCCCATCAGATCCTGATAACTTCCCTTTTGTTCTGCTGGGTAACAAAGTTGATG
TAGATGGTGGGAACAGTCGCGTGGTCTCTGAGAAAAAGGCGAAGGCATGGTGTGCCTCTA
AAGGGAACATCCCATACTTTGAGACTTCTGCCAAGGATGGAATCAACGTGGAGGAGGCTT
TCCAGTGTATAGTAAAGAACGCTCTGAAGAATGAGCCAGAGGAAGAATTGTATATGCCGG
ACACTGTGGACGTGGTGGGCGGCAACCGGGGTCAAGGATCGTCAGGATGCTGTTAGAACA
TGAGGGCCCACAACTGTGGGCTATCCTTTGACATTACTGTATTTCCATGGCGACTTATGG
ACCTGTATTTCATTCGTGACCTTCTTCAATCACCTCGTAAGTGCCCAGGGAATGATTGAT
GCGTCTGTTCCGATCTGTCAATTTGTGGACGTTTGTGTAGTTTTATCATTATCATCAGTA
GCGTCATATCTTGTGAATACAGTCAGCGGAATAAGTGAAGTGTAAACTACAGTTGCTTCA
TTATGGTTTTGTGTGAAAGAAGCTTAAATTTGGCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_1328 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g44050.1	207	5e-145	protein\|ras-related protein, putative, expressed
Brachypodium v1_2	Bradi2g19750.6	207	6e-148
Arabidopsis v10	AT3G18820.1	206	6e-129	\| Symbols: ATRABG3F, ATRAB7B, RAB71, RABG3F, RAB7B \| RAB GTPase homolog G3F \| chr3:6484266-6486005 FORWARD LENGTH=206