barSeed - Barley Seed Development Database

Probe CUST_36871_PI390587928

Source Contig U35_1357

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36871_PI390587928	Hv_44K_v2	AACCATGGAGGGATGTCATTCCGACCTTGCCTTACTGAAAATTATAATCAGAAATGGTGA	2362	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.330	1.348	1.208	1.074	0.415	0.399
Raw	965.890	1557.193	1188.246	1683.317	226.117	234.303

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68497.1	2597	7e-23	23 - 82	98	59 / 60	minus	ABC03785 ABC03786 ABC43785
JLOC1	JLOC1_45322.2	2629	4e-23	2516 - 2575	98	59 / 60	plus
JLOC1	JLOC1_45322.1	2817	4e-23	2704 - 2763	98	59 / 60	plus
Harvest21	ABC03786	2437	3e-25	2356 - 2415	100	60 / 60	plus	ABC03786
Harvest35	U35_1357	2444	3e-25	2363 - 2422	100	60 / 60	plus

Contig Sequence (2444 bp)

>U35_1357 2444 Hv_44K_v2
CTCTCCCACCTACCAAAACGTATCGCCTCGTTAGGGTTTCTCCCAGGGTTTTTCCCCCGC
GCCGCCGCCGCCGCCGCCGCCACCCCGCTCCTCCGGATCGCCGCCATGGCCGCCGCAGCC
ACCGCTGCCGACCAGGCTACGAATTTGCTGCAGAAGCTATCCCTTGATGCCAAGACCGAG
GCCATAGACGCGCCGGCGGCGAAGGAGAAGGCGACCGGAGGGCTGGGCGGCAAGCTGAAT
GGTGTGGCGGCGACTCGGAACCCACGGGGGGCCGAGCAGTGGGCAAATCCACAGGATTAC
AGCGATGCAAGCATGTATTATGGCGCCTACCCTGCTGCTTACTATTGCGCAGGTTGGGGT
GATTATTCCATGTACTTGAGTCAGGATGGAGTGGAAACACCTACCGCTGGTGCCTATGGT
GACATGTACTGCTATCCTCAATATGGGCCTGATGGTCAGATGTATGGGTCACAGCAATAT
CAGTACTCATCATCATACCACCAGCCGCAGAACACTGCCACTAAGCCACAATACAAGTCT
AAAACTGACAAGCTGGCCCCATCGAAAGAGATTTCCTCTACTGTTGCTGATCCGCTGCAT
GCCATAGTCAGTGCTGCTCCCAAAGCCACTTCAAACGGTATTGATGATGTTAAAGGTCTG
AAACCAAGTGGGAACAATGGTAGTTACCTGAACCCAAGTAGCAGACCAGCGTATCCATTT
TATGGTGGCCAAATCTACCAGGGAAAACAGCAGAGGCCTTCTATTGGCAATCCTACTTCA
ACTGATTCAAATCCTAAAAGCAAGGTTCAGTTGAAGAATCAGAATACTCAACCTCTTCCT
CCTCTGATGAGTTTACCTAACTCACCGGTTGCTTCAATGTACGCTGGTAATGGGATGTAC
AACAGCAATGCCTATGGTGGCTTTTGGTATGGATCCCAATTTTATGGGCCAGGAATGTAT
GGTGGATGGAATAATCTGTCGGATGGAAAATACAAGCCCCGAGGGAGGACAGCATATGGA
TCATATGGATTTCCCAATGAAAACCTTGATGGTTTGAATGAGTTGAAGAGAGGACCACGA
AGTGGACTCTCTAATATCCAACAGGGCTTTGGACCAGCTGCTGCGACAGCTGTGAAAGCA
CAGGATGTTTCTGCTACTGATGGCTCTAATGCAGTTGTGCAGGATCAGTACAACCGGCCT
GACTTCGCTGACACTTACGAAAATGCCAAATTCTTTATTATTAAGTCATACAGCGAGGAT
GATGTTCACAAGAGCATCAAGTACAATGTTTGGGCAAGCACACCCAATGGAAATAAAAAG
CTTGACAGTGCTTATGTAGAAGCTAAATCTGTCAATTCTCCTGTGTTCCTTCTCTTCTCG
GTCAACACCAGTGGGCAGTTTGTTGGTCTTGCTGAGATGGTTGGTCAGGTTGATTTTGAC
AAGACGGTGGAACACTGGCAGCAAGACAAGTGGACTGGTTGTTTCCCTGTCAAGTGGCAC
ATTGTCAAGGATATTCCCAACAATTTGTTAAAGCACATCATTCTCGAGTATAACGAAAAC
AAACCAGTGACAAACAGCAGAGATACACAGGAGGTCAAGCTCGAGCAAGGCCTTCAGGTG
TTGAAGATTTTCAAGGATCATGTCTCCAAAACATCCATCCTGGATGACTTCATCTTTTAT
GATAACCGTGAGAAGATAATGCAAGAGAGGAAATCACAGCGGCAGCATCAACTGAAGAAG
ATCACGAGCCCGAAGCTGCTGCCTACTGTTGACAATGCTGAAAATGACTCTGGCAATGCG
CAGGAATCACAGAAGCCTGAAGTTACCGGAGAGGAAAAATCTGCTGCAGAAGACAATGTG
GTGGCGGCTGCCGTGACTGGTGTTGCCCCGAAAGATGCTAACCCCACAGCCGCAAGCTTG
GCTGTTGCAAATGGCTGCTGATTTTTTTGTCTGTTGAGTTGTGAGTAAGGTGACATGACA
GCTTGGGAGTTTTGGAGGAGGCTGGGGCGGCAGTTCAACTGTTGGAGGCAATCAGGGTTC
TGTTGGGGTTCCGTAGGTGTTTTTGCAGAAAGTTCGATGGATATGGTTAGGTTTCTCTTG
AGATTTCCCCTCTGTATTATTATTTCTCTATCTTGGAGCTGAGTTCGGTTGGTAGGAGAT
AGAGATCATCAGTTGTTGATCTGGGGTGGTGGTGGTGGTGGTGTGTTGTCTTTTTTATCT
TGTTGTTGTTAGGAAATGTACCTAGGTGTGGTGATTTGTACTGGTTTTGCAAGAAGTAAC
TTGTCTGTTTCAGAGTTGTTTAAAAAAAAAAAAAAAAAGATGCATCTCATGTTTTCTTCA
ACAATCTTGTGTGAGGCTTTATAACCATGGAGGGATGTCATTCCGACCTTGCCTTACTGA
AAATTATAATCAGAAATGGTGANAGTTTAAAAACTTACTTAAAA

Homology of Contig U35_1357 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g07490.1	603	0.0	protein\|YT521-B, putative, expressed
Brachypodium v1_2	Bradi1g05970.1	610	0.0
Arabidopsis v10	AT5G61020.1	495	4e-108	\| Symbols: ECT3 \| evolutionarily conserved C-terminal region 3 \| chr5:24557485-24559780 REVERSE LENGTH=495