barSeed - Barley Seed Development Database

Probe CUST_36867_PI390587928

Source Contig U35_1361

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36867_PI390587928	Hv_44K_v2	GTTCCTACGTGGTTTGAGGTCCTGAATATACTGGCTAATATGAGTCCATCGGGATATAAA	718	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.364	1.375	1.160	0.976	0.433	0.419
Raw	462.150	737.547	537.326	703.613	109.831	115.489

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52847.4	3981	9e-22	2018 - 2076	98	58 / 59	minus	ABC03876
JLOC1	JLOC1_33889.1	861	5e-22	748 - 806	98	58 / 59	plus
Harvest35	U35_1361	781	3e-25	719 - 778	100	60 / 60	plus

Contig Sequence (781 bp)

>U35_1361 781 Hv_44K_v2
AGGCCCAGCTGACCCAACAACCCCCCTCACCCTCTCGTCCCCCTCTTCTTCCCTTCCCTT
CCTCGTCCCTTCCAGGTCACGACGCTACCCCCAAATCCCCAGCCTCCAGATCCACCCGCC
GCCGCCGGCAACCCCGTCGCTTCCCGGCCCCTGCGCGCCCCAGCCAGCCAGGATGGCGCA
CGAAGAGGCACCATTTTACCCACGTGAGAAGCTTGTTCAGAAGCAGCAGTATTTCCAGAA
CTTGAGCAAGCATATCCACCTTAAAGGCCGTTACGATGCGGTCATCTCCGTTGCCATTCC
CCTTGCGCTTGCTGGCTCCAGCTTGTTCATGATTGGTCGTGGGATCTACAACATGTCTAA
CGGGATCGGGAAAAAGGAGTGAATTTCTGTCGGTTTTGCTAGTATCTCAGGAAGCGGCAT
GGAAGCGATACTGCCCAAGCTATGATGCCATCTTCGTTTGCAAATAATATTGTCAGAGAA
AGACTGAGTTCATTTCCAGTTCTCTTTTGTTGGTATTTGTGGATATTTGATGTCAGCAAA
TTGATGCTAAACTGGCAATGATGATTCTATAACATTGGCATCATTATCCTTTCTGTTAAA
AAAAAAAAAAAAAGTTGTTTATGTTCTACGTTTCCTTTCAACTGATGTTTTGTTTGTGCA
TTCATGACATGATTTCTTGTCTGTGAATTCATGAGTTTGTTTGTATGGTACGCAGCAAGT
TCCTACGTGGTTTGAGGTCCTGAATATACTGGCTAATATGAGTCCATCGGGATATAAAAA
A

Homology of Contig U35_1361 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None