barSeed - Barley Seed Development Database

Probe CUST_3682_PI390587928

Source Contig U35_5268

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3682_PI390587928	Hv_44K_v2	TTATTTTTGACTTGATAATAAGGGGACCCTCTCCATTTTTCCTCTTTGCGAGACAAAAAA	1464	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251959.1	2167	9e-22	2106 - 2160	100	55 / 55	plus	ABC13698
MLOC	AK365957	1949	9e-22	1792 - 1846	100	55 / 55	plus	ABC13698
JLOC1	JLOC1_31974.1	652	5e-22	484 - 538	100	55 / 55	plus
Harvest35	U35_5268	1535	3e-25	1465 - 1524	100	60 / 60	plus

Contig Sequence (1535 bp)

>U35_5268 1535 Hv_44K_v2
GAGAGCAGGTTAATTCCCCTCGCTGCCGCCGCGAATCCCCTCTCTTCTCCTCTCTCTCCT
CCACTCGCCGCCGTCTCCGACAGCAAGAAGAGTCGCCGGCGGAAAGCCTTGGCGGCTCGG
GTTCCGGCGGCCGCCGCCACGATGAAGCTCGTCCACCGCAATCTCGCCCGCAACGGGCCC
GGCTCCGCCAAGCTGCTGCCGGAGGAGGAGGACGACCTGTGGCACGCGTACAATCTCATC
GCCGTCGGGGACAGCCTCCAGGCCGTCACTGTCCGGAAAGTTCTCAGGGATTCTGCTTCT
GGTGGGCGTGATGCGGAGCGCGTGAAGCTCAAGTTGGAAATTGTAGTTGAGTCTGTAGAT
TATGACAAGGAGGGGAATGTTTTGCGAGTGCGTGGCAAAAATATTACTGAGAATGATCAC
GTGAAGATTGGCCAGTTTCATACTTTAGAACTTGAGCTGAAGAGACCTTTTGTTCTACGA
AAGGAATATTGGGATTGGTTAGCACTTGATACCATCCAACAAGCATGTGATCCTACTGCA
AGTGCTGATCTAGCAGTTATTCTTATGCAAGAAGGACTTGCCCACTTATTCCTTATTGGG
AGAAGCATAACAGCAACAAGGTCACGCATTGAAACATCGATCCCTAGGAAACATGGACCT
GCCATTGCTGGTTACGAATCGGCTCTCAAGAAGTTCTTTGAGCATGTTTTACAAGCTTTG
CTGAAGCACATTGATTTCGAAGTGGTCCAATGTGTTGTAATTGCAAGCCCAGGTTTTACT
AAGGATCAGTTTCGTGATTACATGCATCTTGAAGCTGCACGGCGAGACTTGAGAGTAATA
ATTGAGAATAAATCACGCATTATTCTTGCACATGCACCTTCAGGCTACAAGCATAGTTTG
AAGGAAGTTTTGGACACCCCAGGTGTGATGTCACTGATAAAAGATACAAAAGCGGCACAG
GAGGTGCAAGCTTTGAAAGAGTTCTTCGCTATGCTTACTAATGACTCAGCCCGAGCGTGT
TATGGACCTAAGCATGTTGAGGTCGCACATGAGCGCCTTGCAATACAAACTCTTCTGATG
ACAGATACTTTGTTTCGGAACACGGACATCGTTAGCAGGAGAAAGTATGTGAACTTGGTT
GAGTCAGTCAAGAAATATGGTGGTACAGTGCACATATTTTCTTCGATGCATGTCTCCGGC
GACCAATTGGCGCAGTTGACAGGAATAGCAGCTATACTTCGATTCCCCCTGCCAGATTTG
GAGGACATCGAGATGTGATTAGTCCAGTCCCTCCGGAGCTGCCTAACATTTTTCGTACCA
ACCTGTTAACTTATAGCTGATCAAGTGTGATAATATAACAGTTTGGCTCAAAGAAATTCT
GACAACATTTTAATGTATCCTTGTTGTATTTTCTTTTGAGAAGATATCTTTATTGTAAAT
GGTTAGTTATGCCACATCTATTGGTTATTTTTGACTTGATAATAAGGGGACCCTCTCCAT
TTTTCCTCTTTGCGAGACAAAAAAAAAAAAAAAAA

Homology of Contig U35_5268 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os04g56480.1	379	protein\|pelota, putative, expressed
Brachypodium v1_2	Bradi5g24820.1	379
Arabidopsis v10	AT4G27650.1	378	\| Symbols: PEL1 \| Eukaryotic release factor 1 (eRF1) family protein \| chr4:13803459-13807556 REVERSE LENGTH=378