barSeed - Barley Seed Development Database

Probe CUST_36707_PI390587928

Source Contig U35_7546

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36707_PI390587928	Hv_44K_v2	CAGCGCCGCCACGCCGCCCGACGAGCTCGCCGCGCTCTTCTTGAAGGGGATCCCGCACAC	231	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356073	1765	2e-24	212 - 271	100	60 / 60	plus	ABC14419 ABC42958
MLOC	MLOC_14952.1	477	2e-24	277 - 336	100	60 / 60	plus	None
JLOC1	JLOC1_10225.1	404	8e-25	203 - 262	100	60 / 60	plus
Harvest35	U35_7546	611	3e-25	232 - 291	100	60 / 60	plus

Contig Sequence (611 bp)

>U35_7546 611 Hv_44K_v2
TCGAGCACTGTTGGCCTACTGATTGCCCTGATCGATCTCGCGTGCCCTCCTCCCCCCTCC
AAACCCTTCCCCGATGGCCGCCGCCGCCGCGCTCCGCCGGGCCCTCGCTCCGGCACCGGC
GCTCCTCCTCCGCCGGCAGGCCCTCGTGCGACTCCTCTCCACGCAGAACCAGTCCCCCGC
CGCCCCCACCATCAGCCCCGCCGAGCTCGTCCGCATCAAGAACTCCATCCGCAGCGCCGC
CACGCCGCCCGACGAGCTCGCCGCGCTCTTCTTGAAGGGGATCCCGCACACGCCCTTCCT
CGGCGACCGCTCCATCTTCTCCCTCGCCGTCTCGCGCCTCACCGCCGCCGCCCGCCCCGA
CCTCGTCTCCTCCGTGCTCTCCGCCTCCCTCACCGCCCTCCCGGCGCCGCACCCCTCCGA
GGGCTTCCTCATCCGCCTCATCGCGCTCTACGCCGACGCCGGCATGCCCACCCACTCCCT
CTCCACCTTCCGCCTCGTCGTGCCCCCCTCCGACCGCGCCCTCTCCGCGCTCCTCGCCGC
CTACCACGACGCCGGCCAGCCCGCCCGCGCCATCCAGGCCTTCCGCGACCTCTCAGCGGA
GCTCTCCATCG

Homology of Contig U35_7546 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None