barSeed - Barley Seed Development Database

Probe CUST_36700_PI390587928

Source Contig U35_7554

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36700_PI390587928	Hv_44K_v2	CGATGTAACTCTAGTTCTAGCCACTATGCTTGTATCACAACTAAATGATGGGAGTGTTCC	932	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57476.4	1533	2e-24	543 - 602	100	60 / 60	minus	ABC16346 ABC20364
MLOC	MLOC_57476.2	1845	2e-24	662 - 721	100	60 / 60	minus	ABC16346 ABC20364 ABC34577
MLOC	MLOC_57476.1	1651	2e-24	696 - 755	100	60 / 60	minus	ABC16346 ABC20364 ABC34577
MLOC	MLOC_57476.3	1632	2e-24	642 - 701	100	60 / 60	minus	ABC16346 ABC20364 ABC34577
JLOC1	JLOC1_37258.3	1788	8e-25	928 - 987	100	60 / 60	plus
JLOC1	JLOC1_37258.2	2037	8e-25	915 - 974	100	60 / 60	plus
JLOC1	JLOC1_37258.1	1813	8e-25	1063 - 1122	100	60 / 60	plus
Harvest21	ABC16346	992	3e-25	933 - 992	100	60 / 60	plus	ABC16346
Harvest35	U35_7554	992	3e-25	933 - 992	100	60 / 60	plus

Contig Sequence (992 bp)

>U35_7554 992 Hv_44K_v2
CAACCCCCAGCCCCAATCCCCGAACCCACCCAACTAACCGGTCATTTTTTTCTCATTCAT
TCATTAAAGGAAGGAAACTGACCGGCCATGGAGCTGTCGATGAGCGGCGGCGCACTGCGG
ACTTTCTCCCGGTGCGTCACCTGCCTCGCCCGCATCGGCTCCGACCTCGTCTTCCAGGCC
TACCCCGACAAGCTGGAGCTGCACACGCTCAACAGCTCGCGGTCGGCGTTCGCGTCCGTC
TCCCTCACGCGCGACTTCTTCGACCACTTCCACCTCCCCGCCGACCTACACGCCGCGCCC
TCCTCCACGCCGCTCCAGTGCAGCGTCCTCCTCAAGTCCGTCCTCGCTGTGCTCCGCACG
CCGACCTCCGCGATCGACCGCCTCAACGCTTCGCTCCCAAACCCCCAAGCGTCCAAGCTC
GAGTTCGTCATCCACTGCCTCAGCGGGCGTAAGAAGACGCACCGGATCTCGTGCAGCGCC
GAGTCCGATGTGCAGACTCTGGCGCTCGACCGCAACCGCTTCCCCAGCCGCCTCGCCATA
CGGCCACGGGACCTCACGCGCCTGCTCTCCAATTTCCAGTCCTCGCTGCAGGAGCTCACC
GTTATTGCCACCGAGCCTGCTGCAGTGTTGCCTGGCGTCGATGATGGCACTGAGGGGAAG
GCAGTCGAGCTCCTAAGCTACATTGACCCCACCAAAGATGACTACGACAGTAGGCTGCAC
ACACAACTGTGGATCAATCCAGCAGAGGAGTTCTTGGAGTATGAGCATGCTGGTGATCCC
GTGGATGTCACATTTGGGGTCAAAGAATTGAAGGCATTTTTAACATTTTGTGAAGGATGT
GAGGTTGATATTCTCCTATTCTATGAGAAGGCTGGCGCACCTGTCCTGTTGGCTCCAAGA
TTTGGATACGATGATGGATCAAGTTCTAATTTCGATGTAACTCTAGTTCTAGCCACTATG
CTTGTATCACAACTAAATGATGGGAGTGTTCC

Homology of Contig U35_7554 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g22450.1	448	3e-162	protein\|auxin response factor 75, putative, expressed
Brachypodium v1_2	Bradi1g62700.1	443	2e-164
Arabidopsis v10	AT3G05480.3	456	2e-109	\| Symbols: RAD9 \| cell cycle checkpoint control protein family \| chr3:1585383-1588238 FORWARD LENGTH=456