barSeed - Barley Seed Development Database

Probe CUST_36698_PI390587928

Source Contig U35_7556

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36698_PI390587928	Hv_44K_v2	GATCATGCAGCAAAAGGCAACCATGATATATACTCGTACATAGAGTATCAGTTGTTAAAA	632	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355198	2276	7e-23	2174 - 2230	100	57 / 57	plus	ABC21251 ABC29300
MLOC	MLOC_10689.1	3075	7e-23	133 - 189	100	57 / 57	minus	ABC21251 ABC29300
MLOC	MLOC_10689.2	2133	7e-23	48 - 104	100	57 / 57	minus	ABC21251 ABC29300
MLOC	MLOC_10689.3	2383	7e-23	39 - 95	100	57 / 57	minus	ABC21251 ABC29300
JLOC1	JLOC1_7009.2	2274	4e-23	2032 - 2088	100	57 / 57	plus
JLOC1	JLOC1_7009.1	2534	4e-23	2292 - 2348	100	57 / 57	plus
Harvest35	U35_7556	705	3e-25	633 - 692	100	60 / 60	plus

Contig Sequence (705 bp)

>U35_7556 705 Hv_44K_v2
GGGGTGGCGGAGGGGTTCTCGTCCGTGGGGCACATGGAGTTCCTGTACGACCAGGCGCCG
GAGAGCATGCGCAGCACCGCCGCCGCGCTCTTCTGGCTCTCGGCCTCCCTCGGCAGCTAC
ATGGGCACGGTGCTCGTGACGGCGGTGCAGAGCGCCACGCGGGGCAGCGGCGACTGGCTC
CAGGACAACATCAACCGGGGCAGGCTGGACGCCTACTACTGGCTCGTCACCTGCCTCATG
GTGCTCAACCTTGGCTACTACCTCATCTGCTTCCATTTCTACACCATGAAGCCATTGGAG
TTGGCGGAAGACGGTGACCACCACAAGGAGTGCGAGCTGCCCTCCATCCACAAAAATGGC
AACGGCGGCGCCGCCAGCGGCTTGGTATAAGAATAAGATCGAGTAGTCGGAGGGTATAGT
ATAATTACGCCGAATCTGGTTAGTAACTGTATACTGTAGTAAGTATATGGAGTACGTACT
AACTAATTCAAGGATACATGCGTGCACAACCGTTGCAACTTCCAAATGGCCTTGGAGCTA
GCTTAGTACTGTAGTATAGTATAAGCATCCCGTGACAAGATCCATTTGTGAAGATAATGA
TCATGATCCTGTCGCAAAAAAAAAAAAAAGAAGATCATGCAGCAAAAGGCAACCATGATA
TATACTCGTACATAGAGTATCAGTTGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_7556 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g33960.1	605	9e-67	protein\|peptide transporter PTR2, putative, expressed
Brachypodium v1_2	Bradi2g25460.1	602	2e-71
Arabidopsis v10	None