barSeed - Barley Seed Development Database

Probe CUST_36684_PI390587928

Source Contig U35_7571

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36684_PI390587928	Hv_44K_v2	TTCTACATCAACTGCTTCTAATCCTAAAACCAAGGGTTTGCTTGGGCAAAACTTAGCAAT	744	GeneList: floralwhite MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.663	0.650	1.572	1.369	1.068	1.097
Raw	67.608	90.507	216.275	253.201	83.237	90.711

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68496.2	1603	2e-24	622 - 681	100	60 / 60	minus	ABC03785 ABC03786
MLOC	MLOC_68496.1	1758	2e-24	622 - 681	100	60 / 60	minus	ABC03785 ABC03786
MLOC	AK376464	2451	7e-23	841 - 900	98	59 / 60	plus	ABC03785 ABC03786
JLOC1	JLOC1_45321.2	1537	8e-25	857 - 916	100	60 / 60	plus
JLOC1	JLOC1_45321.1	1807	8e-25	1127 - 1186	100	60 / 60	plus
Harvest21	ABC16271	807	3e-25	745 - 804	100	60 / 60	plus
Harvest35	U35_7571	807	3e-25	745 - 804	100	60 / 60	plus

Contig Sequence (807 bp)

>U35_7571 807 Hv_44K_v2
GCCGCGCCGCGCCGCGCCCCGCCGGACCGCCGCCATGGCCCCCGCCGCCGACCACGCCGC
GGATTTGCTGCGCAAGCTGTCGCTGGATCCCAAGGGCGTCGTCGCCGGCCAGGGCAAAGA
GGCGCAGAACAAGGTCTCGGCAGCGCCCAATGGCAGGCTGAACGGCGTGGTGGCATCTCC
AAGCCCCCAGGTGTCGTCGGCGGGGCAGTGGCCCGCCATGGGGCAGCAGGATTACAAGAA
TGCCAACATGTATGGTGCTGGCGCAGACGCCTACCAGTACTACTATGGAGGCTGGGGTGA
TTATTCAGTGTATGTGGGCCTTGACGGAGCAGAGTCACTTAACCCTGGTGTTTATGGGGA
CATGTATTGCTATCCTCAGTATGGTGTTGCTTCATCTGGGTATGATGGGCAGCAGATGTA
TGGGTCTCAGCATTACCAGTACCCGTCCACGTATCACCAGCCACAGACTACTAGCACCAC
TAAGCCAGCATACAAGCCCAATGCTGGCAAATCAGATCCTTTACCTCAGAAGGATGCTTC
TGCTGCACCTGCTGCTTATCAGCAGCCTGGATTGCTGGTTGCTTCCAAAGCCAATTCAAA
CAGCACTGATAGCTCAACAGGTCTGAAGAAAACGACATACCCCGTGAAACCAAGTGGGCG
TTCAGCTAGTTATCAGAACCATGGTGACAAAGCTGCTTATCCATCGTATGGTGGTCATAC
TCAGCAGAAACTCTCTGTTGGAAATTCTACATCAACTGCTTCTAATCCTAAAACCAAGGG
TTTGCTTGGGCAAAACTTAGCAATGGG

Homology of Contig U35_7571 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g05970.2	602	5e-64
Arabidopsis v10	None