barSeed - Barley Seed Development Database

Probe CUST_36670_PI390587928

Source Contig U35_7586

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36670_PI390587928	Hv_44K_v2	AGGGATCTCAAACCTGAAAACTTCTTGCTGGCCAACAAGGATGACGACATGTCGCTTAAG	905	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364859	2198	2e-24	751 - 810	100	60 / 60	plus	ABC04589 ABC16157
MLOC	AK366527	1577	2e-24	426 - 485	100	60 / 60	plus	ABC16157
MLOC	MLOC_68114.2	1788	2e-24	415 - 474	100	60 / 60	plus	ABC04589 ABC16157
MLOC	MLOC_68114.1	1992	2e-24	437 - 496	100	60 / 60	plus	ABC04589 ABC16157
JLOC1	JLOC1_45034.1	1929	8e-25	437 - 496	100	60 / 60	plus
Harvest21	ABC15875	970	3e-25	906 - 965	100	60 / 60	plus
Harvest35	U35_7586	970	3e-25	906 - 965	100	60 / 60	plus

Contig Sequence (970 bp)

>U35_7586 970 Hv_44K_v2
GCGCAGCACAGCCAGGGAAGGCCGCCGCAACCTTCGCTTCGCTTTCCGCAAACGTGACCG
CGAAGCCGCCGTGAAGTCGCCGCCGCCTCCTCCTCCAGCCCACTCTCGAGTCCAGAGGCC
GCAACAACTCTCAGCCTCGCGGCCTCCGCCCATTTCGGCTCCATCGGCCGCGCCGCGACG
CCTCCGCCACTGCCTAGCCAGCCTAGACCTCATCCTAGGCCTCATCGGAGCTTCAGGTAG
ATGCGAGAGAGATCGCCTCCCGCGGCCGTGTGATGGGCAACACGTGCGGCGTCACCTTTA
GATCCAAGTACTTCTCCAGCTTCCGCGGCGCGTCGCAGCGCCACGACTCGGGCTACGCGC
CCGTCGCCGCCGATGCCGACGCCGATTCCCAGCCAGGCAAGCGGCCCTCGCGCCCGGCGG
CCGTGGCCGACGCGGCCGCCCCGCCCCCCGCCGCCGGCATGCGCCGGGGCTCGCTCGCGC
CAGCGGAGCTGACGGCCAACGTGCTCGGCCACCCCACCCCGAGCCTCCACGACCACTACC
TGCTCGGCCGCAAGCTCGGGCAGGGGCAGTTCGGCACCACCTACCTCTGCACCGACCGAG
CCACGGGGGCGGACTACGCCTGCAAGTCCATCGGCAAGCGCAAGCTCATCACCAAGGAGG
ACGTCGAGGATGTGCGCCGCGAGATCCAGATCATGCACCACCTCGCCGGACACCGGAACG
TCGTCGCCATCAAGGGCGCCTACGAGGACCCGGTCTACGTCCACATCGTCATGGAGCTCT
GTGGCGGCGGCGAGCTCTTCGACCGCATCATACAGCGGGGGCATTACAGCGAGCGCAAGG
CGGCCGAGCTCACGCGCATCGTCGTAGGAGTTGTCGAGGCGTGCCACTCGCTCGGGGTCA
TCCACAGGGATCTCAAACCTGAAAACTTCTTGCTGGCCAACAAGGATGACGACATGTCGC
TTAAGGCCAT

Homology of Contig U35_7586 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g46090.1	550	4e-123	protein\|CAMK_CAMK_like.15 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
Brachypodium v1_2	Bradi3g51970.1	557	5e-133
Arabidopsis v10	AT2G17290.1	544	9e-90	\| Symbols: CPK6, ATCDPK3, ATCPK6 \| Calcium-dependent protein kinase family protein \| chr2:7517005-7519239 FORWARD LENGTH=544