barSeed - Barley Seed Development Database

Probe CUST_36650_PI390587928

Source Contig U35_12610

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36650_PI390587928	Hv_44K_v2	TCCACCATCGATGTCTTCGACGGCGTCGAGTTCATGTGGTCGTCCGTCCACAAGACAAAC	413	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_34513.1	2231	2e-24	1412 - 1471	100	60 / 60	minus	ABC17102 ABC26328
MLOC	MLOC_34513.2	1863	2e-24	1279 - 1338	100	60 / 60	minus	ABC17102 ABC26328
JLOC1	JLOC1_22265.1	2085	8e-25	725 - 784	100	60 / 60	plus
Harvest21	ABC43316	491	3e-25	414 - 473	100	60 / 60	plus
Harvest35	U35_12610	491	3e-25	414 - 473	100	60 / 60	plus

Contig Sequence (491 bp)

>U35_12610 491 Hv_44K_v2
CGGCACTGATGGATCTCTCACCAGCCAGCGCGGGCGCCTATGGCGGAAAGGCGGCGGACG
CGTACCGGATGGCGCTCAGCTCAGCGGCCTCGGCGGCCGCGTACGCCGTACTGGCGCGGA
GCATGGCGCGTGAACTCCTCCCGGACGAGCTGCGCGCCGCCGTGCGCTGGGGCGCGTCCA
TGCTCCGCGCGCGCCTCGGCTGGGGCGCCAAGGAGCGCCGGACGTTCGTCATCCGGAGCC
ACACCAGCGGCGGCGGTCGCGAGGAGAATCTTCTCTTCGACGCAGCGCGGACGTACCTGT
CCTCCAGGCTCGACCCGCGCGCCATGCGCCGTCTCGAGCTCAAGCTGTGCGCCACCAGGG
ACGATGGCGGCCTCAGAAGCTGGACCAAGCGCCTCTTCATTGAGCCTGAGGACTCCACCA
TCGATGTCTTCGACGGCGTCGAGTTCATGTGGTCGTCCGTCCACAAGACAAACGGCAGCG
TGGGAGGAAGC

Homology of Contig U35_12610 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None