barSeed - Barley Seed Development Database

Probe CUST_36648_PI390587928

Source Contig U35_12612

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36648_PI390587928	Hv_44K_v2	ATGGACCATAATTTCACCTCGGTGCTCACCGATCTGCTCGTCCGATCGTCGGGCAGTGAT	375	GeneList: black MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.278	0.495	1.072	1.153	1.640	1.472
Raw	3.522	12.956	26.790	45.324	22.032	22.217

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65319.3	2107	2e-24	981 - 1040	100	60 / 60	minus	ABC40649
MLOC	MLOC_65319.2	3493	2e-24	1023 - 1082	100	60 / 60	minus	ABC40649
MLOC	MLOC_65319.1	6744	2e-24	4275 - 4334	100	60 / 60	minus	ABC13025 ABC40649
JLOC1	JLOC1_42978.2	3593	8e-25	2409 - 2468	100	60 / 60	plus
Harvest21	ABC25143	588	3e-25	376 - 435	100	60 / 60	plus
Harvest35	U35_12612	589	3e-25	376 - 435	100	60 / 60	plus

Contig Sequence (589 bp)

>U35_12612 589 Hv_44K_v2
CAGCCGCTTGGCATTGCCGCGACAAAGCTGCTCACTGCGTTGTCGCCACAGATGGGGCAC
ACCATTGCCGAGAAGCTTTGCAAGGTGCCTGGGCAGCTGGGCAGGCTGATCAGGAGCATC
AGCCAGTTGGGGCGGATCACGGAGCGGCATGCCGTGTCTGCGACGCTCCTGTCAAAGCTG
CCCTATCAGCATCTGACACTCAACCTCGCGCTGTTGCACCAGAACGCAGTGCCGACCATG
CTGGCCAAGATAGAGGAGATGCAGCGTGGCGGGATGCGGGCGAGCCGCCATGCTAAGCCA
TACATGGAGGGCCTCGTGGGCTCGCTCGTCCGGCTGACAACGACTCTGCACGATCAGGAT
GTGCTCCAGGCGGCCATGGACCATAATTTCACCTCGGTGCTCACCGATCTGCTCGTCCGA
TCGTCGGGCAGTGATGAGGTGCAGCGGCTCGCGGCGGTTGGCCTGGAGAATCTCAGCCAG
CAGTCAGCAAACCGGTCGAAGCCGCCGTCCGAGGAGCAGCAGCCCAAGAAGAACATCCTC
CGGCGCCTGCGCACCGGCCGGGTGCACGACAACCGGAAGCCGCATGCGC

Homology of Contig U35_12612 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g16410.1	974	3e-93	protein\|armadillo/beta-catenin repeat family protein, putative, expressed
Brachypodium v1_2	Bradi1g43637.1	964	3e-95
Arabidopsis v10	None