- Probe CUST_36641_PI390587928
- Source Contig U35_12622
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_36641_PI390587928 | Hv_44K_v2 | TCAAAGAAACCTCCAGTACCTAACTGGCTTCGAGAAGAGCTTCTAAAGAAAAAGTCCACC | 545 | GeneList: cyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.015 | 1.807 | 1.244 | 0.653 | 0.551 | 0.572 |
| Raw | 94.850 | 117.901 | 78.170 | 60.233 | 19.103 | 21.728 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_22342.20 | 3166 | 2e-24 | 500 - 559 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_22342.9 | 2289 | 2e-24 | 647 - 706 | 100 | 60 / 60 | plus | ABC20714 |
| MLOC | MLOC_22342.10 | 3103 | 2e-24 | 1562 - 1621 | 100 | 60 / 60 | plus | ABC20714 |
| MLOC | MLOC_22342.4 | 3448 | 2e-24 | 976 - 1035 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_22342.5 | 4336 | 2e-24 | 1698 - 1757 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_22342.3 | 4469 | 2e-24 | 2302 - 2361 | 100 | 60 / 60 | plus | ABC20714 |
| MLOC | MLOC_22342.14 | 3178 | 2e-24 | 1072 - 1131 | 100 | 60 / 60 | plus | ABC20714 |
| MLOC | MLOC_22342.15 | 3535 | 2e-24 | 989 - 1048 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_22342.16 | 3765 | 2e-24 | 2278 - 2337 | 100 | 60 / 60 | plus | ABC20714 |
| MLOC | MLOC_22342.13 | 3153 | 2e-24 | 1586 - 1645 | 100 | 60 / 60 | plus | ABC20714 |
| MLOC | MLOC_22342.21 | 2633 | 2e-24 | 672 - 731 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_22342.11 | 3098 | 2e-24 | 644 - 703 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_22342.12 | 3294 | 2e-24 | 1670 - 1729 | 100 | 60 / 60 | plus | ABC20714 |
| MLOC | MLOC_22342.19 | 3965 | 2e-24 | 1338 - 1397 | 100 | 60 / 60 | plus | ABC20714 |
| MLOC | MLOC_22342.18 | 2298 | 2e-24 | 604 - 663 | 100 | 60 / 60 | plus | ABC20714 |
| MLOC | MLOC_22342.17 | 2652 | 2e-24 | 958 - 1017 | 100 | 60 / 60 | plus | ABC20714 |
| MLOC | MLOC_22342.6 | 2657 | 2e-24 | 1004 - 1063 | 100 | 60 / 60 | plus | ABC20714 |
| MLOC | MLOC_22342.7 | 3307 | 2e-24 | 1654 - 1713 | 100 | 60 / 60 | plus | ABC20714 |
| MLOC | MLOC_22342.8 | 3252 | 2e-24 | 1599 - 1658 | 100 | 60 / 60 | plus | ABC20714 |
| MLOC | MLOC_22342.1 | 2578 | 2e-24 | 985 - 1044 | 100 | 60 / 60 | plus | ABC20714 |
| MLOC | MLOC_22342.2 | 3685 | 2e-24 | 1096 - 1155 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_15488.27 | 4021 | 8e-25 | 1409 - 1468 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15488.26 | 4544 | 8e-25 | 1492 - 1551 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15488.25 | 4370 | 8e-25 | 1381 - 1440 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15488.24 | 3413 | 8e-25 | 1420 - 1479 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15488.23 | 2449 | 8e-25 | 525 - 584 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15488.22 | 3074 | 8e-25 | 525 - 584 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15488.21 | 3883 | 8e-25 | 894 - 953 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15488.20 | 4022 | 8e-25 | 1526 - 1585 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15488.19 | 3713 | 8e-25 | 1554 - 1613 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15488.18 | 2582 | 8e-25 | 595 - 654 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15488.17 | 3969 | 8e-25 | 917 - 976 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15488.16 | 2625 | 8e-25 | 632 - 691 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15488.15 | 3011 | 8e-25 | 955 - 1014 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15488.14 | 4046 | 8e-25 | 1550 - 1609 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15488.13 | 2948 | 8e-25 | 955 - 1014 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15488.12 | 2692 | 8e-25 | 636 - 695 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15488.11 | 3598 | 8e-25 | 986 - 1045 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15488.10 | 4038 | 8e-25 | 986 - 1045 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15488.9 | 3975 | 8e-25 | 986 - 1045 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15488.8 | 3535 | 8e-25 | 986 - 1045 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15488.7 | 4607 | 8e-25 | 1555 - 1614 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15488.6 | 3044 | 8e-25 | 988 - 1047 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15488.5 | 3613 | 8e-25 | 1557 - 1616 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15488.4 | 2997 | 8e-25 | 1004 - 1063 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15488.3 | 3655 | 8e-25 | 1599 - 1658 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15488.2 | 3654 | 8e-25 | 665 - 724 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15488.1 | 4779 | 8e-25 | 1624 - 1683 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC23367 | 629 | 3e-25 | 546 - 605 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_12622 | 629 | 3e-25 | 546 - 605 | 100 | 60 / 60 | plus |
Contig Sequence (629 bp)
>U35_12622 629 Hv_44K_v2 GCTACCCGCCTCCGCCTCCGGGACAGGCATGGCCGAATCATTCTTGGGCCCAAAACCATG GATACCCAGGTAATGGGAATGCTATGCTTCAATATCCAAGCCCACGAGCTCAGCCATCTC TGAGTGCCTCATCAGTTCAAGATGGATTTCCTCGCGGGCCTCCTGGTGTGCCTGGGCATG GTGTACCGTCTTATAGGATTATGGCTGATCCCAGTGACCAACCCTTGGAGTTCAATGACA GAAAAGCTCCTGACATGGCAGTACATGAGACAATAAATATCAGATCTACTGCTCCAACAG CAGTGTCTGAACATGGCACAGTTCCAACATCAACTCAATCATGGGGTCCATCTGCTACAG TTGGATATTTTCATCCAGCCCCAGTACCACCACAAGCATCACAGATGGATCCTTCTTTGC ATGGTGGACCACTCTTTGGAGCACTCTCTGGTTCGAACTATGTTCCACCTGCAGCATTTG GTGTTGGTAGTGTAACTGAAGCATTCCCTACAGATGCAAACACTCTTTTCAATGTTGCAG AACGGTCAAAGAAACCTCCAGTACCTAACTGGCTTCGAGAAGAGCTTCTAAAGAAAAAGT CCACCCCAGTGAGTGCTTCAGTGCAGCGT
Homology of Contig U35_12622 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os04g56630.2 | 913 | 4e-67 | protein|transposon protein, putative, unclassified, expressed |
| Brachypodium v1_2 | Bradi5g24937.1 | 904 | 2e-79 | |
| Arabidopsis v10 | None |