barSeed - Barley Seed Development Database

Probe CUST_36526_PI390587928

Source Contig U35_17393

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36526_PI390587928	Hv_44K_v2	GTCGAAAATTATTGTCAGTGATGTACTCCCTCCGTTCCTAAATATAAGTCTTTTAAGAGA	1328	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360748	1754	2e-24	1341 - 1400	100	60 / 60	plus	ABC07292 ABC19854 ABC35280 ABC49731
Harvest21	ABC07292	1394	2e-22	1329 - 1388	97	58 / 60	plus	ABC07292
Harvest35	U35_17393	1410	3e-25	1329 - 1388	100	60 / 60	plus

Contig Sequence (1410 bp)

>U35_17393 1410 Hv_44K_v2
GGCATCCAACTTCTAATCGCCTCACCACACAGAAAAGGCAAAAGGAAACAAAAACCTCAT
AGAATTTCCGGGGAGTTACTCTAGAGATTTCCGGCGGAACCTCGCGCCAGGATGGCACCC
ACGGCGACGGAGCCGGAGCAGAGCCAGCAGCACACGAAGAAGGCGGTGGGCCTGGCGGCG
CTCGACGCCTCCGGCCGCCTCTCCCCGCTCGCCATCACCCGAAGAAGCACCGGAGACGAC
GATGTCATGATAAAGATTCTGTACTGCGGGATCTGCCACTCTGACCTGCACAGCATCAAG
AACGACTGGAAGAACGCTAAGTACCCCATGATCCCTGGGCACGAGATCGCCGGCGAGGTC
ACCGAGGTCGGCAAGAACGTGACCAAGTTCAAGGCCGGCGACCGTGTCGGTGTCGGGTGC
ATGGTGAACTCGTGCCAGTCCTGCGAGAGCTGCGACAAGGGCTTCGAGAACCACTGCCCG
GGCATAATCTTCACCTACAACTCGGTCGACCGTGACGGCACTGTCACCCACGGCGGCTAC
TCCAGCATGGTGGTGGTGCACGAGCGTTTCGTGGTCCGGTTCCCGGACGCCATGCCGCTG
GACAAGGGCGCGCCCCTGCTGTGCGCCGGCATCACCGTGTACAGCCCCATGAAGTACCAC
GGGCTGAACGTTCCCGGGTTGCACCTTGGCGTGCTGGGACTGGGCGGACTGGGCCACGTC
GCCGTCAAGTTCGGCAAAGCCTTTGGGATGAAGGTGACGGTGATCAGCTCGTCGCCAGGG
AAGAAGCAGGAGGCCCTCGAGAGGCTTGGCGCTGACGCGTTCGTCGTCAGCAAGGACGCC
GACGAGATGAAGGCTGCGGTGAGCACCATGGATGGCATCATAAACACGGTGTCTGCAAAC
ATCCCCATGGCCCCTCTCCTCGGGCTACTCAAGCCCAACGGCAAGATGATCATGGTCGGC
CTCCCAGAGCAGCCTATCGAGGTCCCTCCCTTTGCTCTGGTTGCCAGGAACAAGACCCTG
GCCGGGAGCTGCATCGGCGGCATGAGGGACACCCAGGAGATGCTGGACCTCGCGGCGAAG
CACGGCGTGACGGCAGACATCGAGGTGATAAGCGCGGAGTACGTGAACACAGCGATGGAG
CGCCTTGCCAAGGCTGACGTCAGGTATCGATTCGTCATCGACATCGCCAACACCCTCGAC
AAGGCCGCCGCTGCAGCCACAACCGAGTGACCGCCGACGTAACTCTAAGCGCTGCTCGCG
GTCTACGTTGGTCTCTGGTTCTCTGCTGTTATCACATACTTTATCAGTAGTACTAGTAAC
ATTGAACAGTCGAAAATTATTGTCAGTGATGTACTCCCTCCGTTCCTAAATATAAGTCTT
TTAAGAGATTTCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_17393 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g29470.1	367	0.0	protein\|dehydrogenase, putative, expressed
Brachypodium v1_2	Bradi3g17920.1	372	0.0
Arabidopsis v10	AT4G39330.1	360	4e-147	\| Symbols: ATCAD9, CAD9 \| cinnamyl alcohol dehydrogenase 9 \| chr4:18291268-18292772 FORWARD LENGTH=360