barSeed - Barley Seed Development Database

Probe CUST_36522_PI390587928

Source Contig U35_17395

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36522_PI390587928	Hv_44K_v2	AAGGCGTTTTAATATGGCAAATTTGGCGATTCTATTTCCAGCAAGTTATAGAAGATCAAG	1319	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355231	4149	2e-24	2044 - 2103	100	60 / 60	minus	ABC00410 ABC02736 ABC02737 ABC02738 ABC07734 ABC37622
MLOC	MLOC_5337.1	1964	2e-24	1 - 60	100	60 / 60	minus	ABC07734
JLOC1	JLOC1_3426.3	1578	8e-25	1431 - 1490	100	60 / 60	plus
JLOC1	JLOC1_3426.2	1488	8e-25	1341 - 1400	100	60 / 60	plus
JLOC1	JLOC1_3426.1	1424	8e-25	1277 - 1336	100	60 / 60	plus
Harvest21	ABC07734	1398	3e-25	1320 - 1379	100	60 / 60	plus	ABC07734
Harvest35	U35_17395	1398	3e-25	1320 - 1379	100	60 / 60	plus

Contig Sequence (1398 bp)

>U35_17395 1398 Hv_44K_v2
GCGACACCCCATCTTCTCCGGTCTGTGAGGCCCCGTGCTCCCCTCTCCCTCTCTCTACCG
ACGCCTCCCCCGCCCGCGAGAGAGAAACCCTAGCCTAGGGTTTCACGCGCCGCCGCCGAC
GCCGACTCCGCCTCGCCCTTCCCCCGAGCTCTCCATGGACGCGGGCCGCAAGAGGGCCGT
GCCGGAAGGCACCAACGGCGGCGCCGCCACCAAGCGCGCCAGAGAATCGGAGTCGGTTCA
AACGGGTGTAGGAAGCAAATCGAAGCCATGCACCAAATTTTTCAGCACTGCTGGTTGTCC
CTTTGGTTCGAGTTGCCATTTTCTCCATAACTTCCCTGGAGGTCACCAGGCTGTTTCAAA
GATGACCAACTTGGGTGGTCCAGCTGTTTCAGCTCCTCCAGGAAGAATGCCCATGGGACC
TGGTGTTCCTGATGGGCCACCACCCAGCATGAAGACTCGCTTGTGTAACAAGTTCAACAC
AGCAGAAGGTTGTAAATGGGGGAACAAGTGTCATTTTGCTCATGGAGAGAGGGAGCTTGG
CAAGCCCATGCTGTTGAACAACTCAATGGCACCTCCAATGGGACCAAGACCCAATGGTCA
CTTCCAGCCCCCACCGATGCCTGGCCCTGACATGGTTCCTCCCTCAACCTTTGGCGCTTC
GGCCACAGCCAAGATCAGTGTTGATGCATCCCTTGCTGGCGCCATTATTGGGAAGGGTGG
AGTCAACACAAAGCACATATCCCGAATGACTGGGGCCAAGCTGGCCATCCGGGATAATGA
GGCAGACCCCAACCATAAAAACATTGAGCTCGAGGGATCGTTTGATCAGGTCAACCATGC
CAGTGCAATGGTGAAGGAGCTGATTCTTCGCATTGGTGGCAACGCCCCTCCTCAAGCAAA
GAACGCAGGGAGGGGTCCTGCGGGTGGTGGGGGAAGCAACTTCAAGACCAAGCTGTGTGA
CAACTTCAACAAAGGCTCTTGCACATTTGGAGACAGATGCCACTTTGCCCATGGTGAGAG
TGAACTGCGCAAGTCGGCTGCGGCTTGAGAGATGCTTTTTTTTCATGGCTTTTCATGATT
AATAGTGATTAGCAAGTCTGAGCTCCGAAGCCGTTCACCCATGGTCATATTGATTGAGTT
GCATAAGCCTGTTGTTGGTTGGGAGGTACTGTCATGGCCCCATGGCTTGAGTGTGATCAG
CTCGCTGTAACCGATAGATATCCGAGAATGGATTTGCTTTTGAGGTTTTTTATTGTAGGC
TTAAGTGTATTGCCGTCTTTTTTTCGCTCTGCTCTGCTTCCAATTTTTGTACTGTTTCTA
AGGCGTTTTAATATGGCAAATTTGGCGATTCTATTTCCAGCAAGTTATAGAAGATCAAGC
TAAAAAAAAAAAAAAAAA

Homology of Contig U35_17395 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g10080.1	301	5e-141	protein\|zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
Brachypodium v1_2	Bradi1g35920.1	299	2e-161
Arabidopsis v10	AT5G06770.1	240	6e-52	KH domain-containing protein / zinc finger (CCCH type) family protein \| chr5:2090937-2092787 REVERSE LENGTH=240