- Probe CUST_36484_PI390587928
- Source Contig U35_46871
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_36484_PI390587928 | Hv_44K_v2 | GTACTGTGCCATGTTAGTACCACGGAGGTTTCTGTTTATTGACTATATGCTGAGTGCAAA | 14 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.167 | 2.220 | 1.106 | 0.739 | 0.241 | 0.178 |
| Raw | 395.993 | 621.440 | 270.791 | 290.401 | 33.287 | 26.581 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_11751.1 | 1952 | 2e-23 | 2 - 59 | 100 | 58 / 58 | minus | ABC00127 ABC00411 ABC00930 ABC50944 |
| JLOC1 | JLOC1_7825.1 | 2084 | 1e-23 | 1973 - 2030 | 100 | 58 / 58 | plus | |
| Harvest35 | U35_46871 | 502 | 3e-25 | 15 - 74 | 100 | 60 / 60 | minus |
Contig Sequence (502 bp)
>U35_46871 502 Hv_44K_v2 TTTTTTTTTTTTTTTTTGCACTCAGCATATAGTCAATAAACAGAAACCTCCGTGGTACTA ACATGGCACAGTACATTAGAGAGCATACAAATATTTGCAGATCGGCTCAGAATGGCGCAT GCACACCAAACTCGGGACGAGTAGCATCGAAAGCCAAAATGTGGAAATGGGGTATCAACA ATCATGGCCACCCTAACAACATCTTCAGTACATTACAGGAAAGGAAACACGCATAACAGC AATCAATATGTAACGCAACGGAACCAAATTACCGAGTATACAGATCAAAGCCAATCATTA ACCAGCCAACTACCTTATTAACCAGCTACTTAGTAGTCATCGCCCTCGTCGCCCTCGTCG TCCGCGCCTTCGGCGCCAACTTCCTCGTAGTCCTTCTCGAGGGCGGCCAAGTCCTCACGA GCCTCCGAGAACTCACCTTCCTCCATTCCCTCGCCGACGTACCAGTGCACGAACGCACGC TTGGCGTACATCAAGTCGAACT
Homology of Contig U35_46871 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |