barSeed - Barley Seed Development Database

Probe CUST_36483_PI390587928

Source Contig U35_46872

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36483_PI390587928	Hv_44K_v2	AGAACTGTCCAGTTCGTCGACTGGTGCCCTACCGGGTTCAAGTGTGGCATCAACTACCAG	494	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11751.1	1952	2e-24	594 - 653	100	60 / 60	minus	ABC00127 ABC00411 ABC00930 ABC50944
JLOC1	JLOC1_7825.1	2084	8e-25	1379 - 1438	100	60 / 60	plus
Harvest21	ABC47505	560	3e-25	495 - 554	100	60 / 60	plus
Harvest21	ABC00411	1860	3e-25	1193 - 1252	100	60 / 60	plus	ABC00411
Harvest35	U35_46872	560	3e-25	495 - 554	100	60 / 60	plus
Harvest35	U35_14081	1843	3e-25	1200 - 1259	100	60 / 60	plus

Contig Sequence (560 bp)

>U35_46872 560 Hv_44K_v2
CTCCATGTGTATCTCCCGATCTCACACATTTTGGGAAGGGAGAGAGAAGCGGAGGAGGCC
ATTCTTTACACCCAAGAAAGCCCGGAAGAGAAGGCGAGGGGCGAGGAGGAGGAGGAGGAG
GAGGAGGAGACGAGATGAGGGAGATCATCAGCATCCACATCGGCCAGGCCGGGATCCAGG
TCGGCAACGCTTGCTGGGAGCTCTACTGCCTCGAGCACGGCATCAATGTGGATGTCACAG
AGTTCCAGACCAACCTTGTCCCTTACCCACGTATCCATTTCATGCTTTCGTCGTATGCCC
CTGTTATCTCTGCCGAGAAGGCTTACCATGAGCAGCTCTCTGTGCCTGAAATCACCAATG
CTGTCTTTGAGCCCTCAAGCATGATGGCCAAGTGTGACCCTAGGCATGGAAAATATATGG
CCTGCTGCTTGATGTACCGTGGTGATGTTGTTCCCAAGGATGTCAATGCCGCGGTAGCAA
CCATCAAAACCAAGAGAACTGTCCAGTTCGTCGACTGGTGCCCTACCGGGTTCAAGTGTG
GCATCAACTACCAGCCACCT

Homology of Contig U35_46872 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g38730.1	451	9e-77	protein\|tubulin/FtsZ domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g23770.1	451	4e-77
Arabidopsis v10	AT5G19780.1	450	4e-75	\| Symbols: TUA5 \| tubulin alpha-5 \| chr5:6687212-6688926 FORWARD LENGTH=450