barSeed - Barley Seed Development Database

Probe CUST_36466_PI390587928

Source Contig U35_46889

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36466_PI390587928	Hv_44K_v2	CTGCATTGTTGTTTACCTGTGATCATTCGCGTGCAGTTAATTTCTCTTGTCGCCCAGAAA	507	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59944.1	1663	2e-24	841 - 900	100	60 / 60	plus	ABC07147
MLOC	MLOC_59944.5	2081	2e-24	792 - 851	100	60 / 60	plus	ABC07147
MLOC	MLOC_59944.4	1910	2e-24	797 - 856	100	60 / 60	plus	ABC07147
JLOC1	JLOC1_39052.5	2205	8e-25	791 - 850	100	60 / 60	plus
Harvest21	ABC47536	653	3e-25	508 - 567	100	60 / 60	plus
Harvest35	U35_46889	653	3e-25	508 - 567	100	60 / 60	plus

Contig Sequence (653 bp)

>U35_46889 653 Hv_44K_v2
CTGGATAGCTAGCAGTGTGAGCTCCATCCAAATTCTTCGTCCTGTTTGACACAAACACCG
ATGGTCTCATCTCGTTTGCCGAGTACATCTTTTTTGTTACATTACTCAGCATTCCTGAGT
CAAGCTTCAGTGCGGCCTTCAAAATGTTTGACGTCGACCTCAGTGGGTGAGTTCTATACT
TCTATTTCTACTCCAGCATACTTTGTCTTATGAACACGGTCCTGCTGTACAATGGTATGT
ATTCTGCATGTAGCTGTTTGTTGATTAGCAAACCTGTTACAGTTCTGTTTGCATGTAAAT
CAAATGATAAAACACAAATTCTTGGTAGGAGAAGAAAATAATTAGTAGGCCGTGTTTACG
TACCAAGTTTAGTGGCTTCAATCCAGTTTTCTTTGTTTATCGTGTAGACGTGTTTTGTTT
ACTGAAGCTGCTGAAGGTATGTTATCCCCTTTTGTTCTCTTTGATTTATGCATAAACAAG
ATACATTTGAATAATGTCTTGTTTGTGCTGCATTGTTGTTTACCTGTGATCATTCGCGTG
CAGTTAATTTCTCTTGTCGCCCAGAAAAAAAGACCTGCTCTTTATGAGCATGTTCAATCA
TCTGGCTTGTTAGTTGATGGTAAAAGAAGGGTAATGAACAAATTTTGGCAATC

Homology of Contig U35_46889 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None