barSeed - Barley Seed Development Database

Probe CUST_36457_PI390587928

Source Contig U35_5800

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36457_PI390587928	Hv_44K_v2	TCCTAATAGAGACCAGTAAACAAAGATGATCTGAAGCACCTAGAAGAAGCAGAGGACAGG	440	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_76565.3	646	2e-24	488 - 547	100	60 / 60	plus	ABC13191 ABC18776 ABC21257 ABC30713
JLOC1	JLOC1_51055.3	620	8e-25	462 - 521	100	60 / 60	plus
Harvest21	ABC13191	786	3e-25	441 - 500	100	60 / 60	plus	ABC13191
Harvest35	U35_5800	786	3e-25	441 - 500	100	60 / 60	plus

Contig Sequence (786 bp)

>U35_5800 786 Hv_44K_v2
CCCATCTCCCTCGACTCCCCTCGCATCTCTCCGTCGCCAGCCTTCCTTCCCCTCACCAGA
CCCCCTGTGCTCCAGTCCGCCACGACAGGCCCCTGCGCTCCCTTCTCCACCTCTCCCATC
AACCTCGTAGGCACGATCCCATGTGCCCAAAGGAGAACGGCGACAAGGCGGCGATAGTCG
TCACCGGGATCTGTCGCCCGCGCTGCCGCTTCCCTGCCTTCTTTGCCGCCGTCGTCGTCC
ATTGCCGCGGATGCCTCCTCCTCGCTCGCGAGATGGCTTATTGCATGCTACACTGGTCCA
ACAAGTAGTGTATTACTTCCTAGATGATATATGCATCGGACAATGGAATGATTCATGTCA
TTCGTCAATCAATGCTAGGCTCTGTATTATCCAATATATTAGTACTTGGATGTGTTCTTT
TTTCATGGATGTCTTGCCCATCCTAATAGAGACCAGTAAACAAAGATGATCTGAAGCACC
TAGAAGAAGCAGAGGACAGGACAGGAGGGGGGAACAAGAAGCTTCGTTTATCATTGATGT
TATGTGTGATCAACAAAAACTTGTGCTTCTCATCCAATCTTTGTCGAACTATGTTGATGT
GTGATTATGCACTTGTTGGGCCCTTTTGCTGTACACCTGCACTTGTAGAACTATTTTGTT
GTGCACTTGTTGGGCCTTGAACCTTTATGTCTAGAGGAATCGATGGATGATATATTGTAA
TTCATGTGATGTGCTACTGAAATGAAATATATACAACTAATTTGCAGTCTAAAAAAAAAA
AAAAAA

Homology of Contig U35_5800 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None