barSeed - Barley Seed Development Database

Probe CUST_36424_PI390587928

Source Contig U35_5833

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36424_PI390587928	Hv_44K_v2	CAACATATCTTAAGTTCTTAACTGCTGGCCGTATAATTGTTCAAGGATCCGTGACGCACG	519	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363789	2476	2e-24	2151 - 2210	100	60 / 60	plus	ABC08614 ABC10633 ABC21001
MLOC	MLOC_57078.1	2022	2e-24	318 - 377	100	60 / 60	minus	ABC21001
MLOC	MLOC_57078.3	1538	2e-24	110 - 169	100	60 / 60	minus	ABC21001
MLOC	MLOC_57078.2	809	2e-24	123 - 182	100	60 / 60	minus	ABC21001
JLOC1	JLOC1_36943.4	1164	8e-25	861 - 920	100	60 / 60	plus
JLOC1	JLOC1_36943.3	1130	8e-25	827 - 886	100	60 / 60	plus
JLOC1	JLOC1_36943.2	1133	8e-25	830 - 889	100	60 / 60	plus
JLOC1	JLOC1_36943.1	872	8e-25	569 - 628	100	60 / 60	plus
Harvest21	ABC21001	740	3e-25	162 - 221	100	60 / 60	minus	ABC21001
Harvest35	U35_5833	829	3e-25	520 - 579	100	60 / 60	plus

Contig Sequence (829 bp)

>U35_5833 829 Hv_44K_v2
ATGCAATATGATAGGAGTGCACTGTCACCTGAAAGCCAGTTCAGTGGGTCCTCCCTTCAG
ACTCAAACTTCTGGAGGCTCCAATATTTTGGCATTGGAACCTCCACAGCAGCAGCAACAG
GGTTTCGAATTCTCAGCAGTTGGTCAGTCCATGCAGCCTGCAAACCTGAACCATTTTGAT
CAATGGTCACATCCGCAAGAGAACCGTGGGGTTGATGACTACTTGATGGAGGAGATCAGG
TTGAGGAGCCATGAGATACTCGAGAATGACGAAATGCAACAGATGCTACGGATTTTGAAC
ATGGGTGGAGCATCTACCAACATGACCGATGATGGCTTCACTTTTCCACCCTACATGGAG
TCACCTTCCCCGAACTTCAACTTTGAGGATGACCGCACTCGTCCACCTGGGAAAGCAGTT
GTGGGTTGGCTTAAAATCAAGGCAGCTATGAGGTGGGGCATCTTCGTCAGGAAGAAAGCG
GCCGAGAGAAGAGCTCAGCTCGTTGAGCTAGATGACTAGCAACATATCTTAAGTTCTTAA
CTGCTGGCCGTATAATTGTTCAAGGATCCGTGACGCACGGGCTCAGCAATGCACCATGGA
AGGACTCGCAAAGTTTAGCTGTTTGTGTATAGTTGTTTCACCATTGTCTATGCATTTGTT
TGTTTAGCGTGCTGTTGATAAGACCATTTTACCTACTGTATACATTTACTTGTTGCAGAT
CCTAGAAAGGGCATTAAAGTGTTTCTATTGGTTTCCACGTAAACAAAGTTTTTTTTAACA
TAGTATAGAAGCAAGCGCTTATACACACGAACAAAAAAAAAAAAAAAAA

Homology of Contig U35_5833 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g35470.2	653	1e-71	protein\|calmodulin binding protein, putative, expressed
Brachypodium v1_2	Bradi3g46060.2	650	4e-80
Arabidopsis v10	None