barSeed - Barley Seed Development Database

Probe CUST_36420_PI390587928

Source Contig U35_5837

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36420_PI390587928	Hv_44K_v2	ACGTGTTACAAGTTACAAGGTCGACTAGCAAAGTGTCAAGAGCAATGACGGAACGTAGCA	61	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367303	2071	2e-24	51 - 110	100	60 / 60	plus	ABC09320 ABC22536 ABC42695
MLOC	MLOC_7926.1	681	2e-24	424 - 483	100	60 / 60	minus	None
JLOC1	JLOC1_5244.1	682	8e-25	425 - 484	100	60 / 60	minus
Harvest21	ABC16842	476	3e-25	26 - 85	100	60 / 60	plus
Harvest35	U35_17616	1799	3e-25	64 - 123	100	60 / 60	plus
Harvest35	U35_5837	593	3e-25	62 - 121	100	60 / 60	plus

Contig Sequence (593 bp)

>U35_5837 593 Hv_44K_v2
TCGAGCACTGTTGGCCTGGATTCACTCGCATTCCATCAACCGTACTCTAGACATTAGCGG
TACGTGTTACAAGTTACAAGGTCGACTAGCAAAGTGTCAAGAGCAATGACGGAACGTAGC
AGGGCCTTTACATTTTCCCTCCTGGTGCTCTTCCTCGGCCTCGCCGTATCCAGCCCGCCG
CCGGAGCCGGTGGAGTGCGCCCGCGGCACGTCCGACTGCACCGTCACCAACGTGTACGGC
TCCTTCCCGGACCGCACCATCTGCCGCGCGGCCAACGCCACGTTCCCCCGCACCGAGAAG
GAGCTCGTGGCCGCCGTGGCTGCCGCCGCCGCGTCCAAACGCAAGGTTAAGGTGGCCACC
AGGCACTCCCACAGCTTCACCAAGCTGGCCTGCCCCGGGGGCCGCGACGGCACGATCATC
AGCACGGAGCGGCTCAACAAGACGGTGAGCGTCGACGCTGCCAAGGGGCTGATGACGGTG
GAGAGCGGCATGGTGCTCAAGGACCTGATCCAGGCGGCCGCCGCGGCGGGGCTCGCGCTG
CCGCACTCGCCCTACTGGTACGGACTCACCATCGGGGGCCTCCTCGCAACGGG

Homology of Contig U35_5837 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g02230.1	590	4e-59	protein\|FAD-binding and arabino-lactone oxidase domains containing protein, putative, expressed
Brachypodium v1_2	Bradi3g13700.1	590	9e-64
Arabidopsis v10	None