barSeed - Barley Seed Development Database

Probe CUST_36376_PI390587928

Source Contig U35_1852

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36376_PI390587928	Hv_44K_v2	TGCATTCTCTGTACTATCATGGAGTTTATCTGAAATGGAGTCTGTCTGTCCGCTTTTCTC	1271	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.667	1.980	1.039	1.026	0.512	0.653
Raw	1434.863	2848.916	1221.123	1935.014	340.598	468.725

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73037.1	1912	2e-24	486 - 545	100	60 / 60	minus	ABC05841
JLOC1	JLOC1_48608.2	1548	8e-25	1275 - 1334	100	60 / 60	plus
JLOC1	JLOC1_48608.1	2070	8e-25	1797 - 1856	100	60 / 60	plus
Harvest21	ABC05841	1831	4e-24	1757 - 1814	100	58 / 58	plus	ABC05841
Harvest35	U35_1852	1378	3e-25	1272 - 1331	100	60 / 60	plus

Contig Sequence (1378 bp)

>U35_1852 1378 Hv_44K_v2
ATTACTCCGCGGCATCCACAGGCACCCCGGCCAGGCTAGCCGTGCCCGTGCTCCCTTCTT
CTCTTCTCCCCCCAAAGAGTCAAAGACAGGCACAGAGGGGACTCGCGCATCCATCACGCA
CGCGCGCACGCATCCGGATCGAGAAGATGGGGAGGGCGCCGTGTTGCGAGAAGATGGGCC
TGAAGAGGGGCCCCTGGACGCCGGAGGAGGACAAGATCCTGGTCGCACACATCCACAGCC
ACGGCCACGGCAACTGGCGCGCGCTGCCCAAGCAAGCCGGGCTTCTGCGGTGCGGCAAGA
GCTGCCGGCTCCGGTGGATCAACTACCTGCGGCCGGACATCAAGCGCGGCAACTTCTCCG
ACGAGGAGGAGCAGTCAATCATCCAGCTGCACCAGCTGCTCGGCAACAGATGGTCCGCGA
TTGCCGCCAGGCTGCCGGGGAGGACGGACAACGAGATCAAGAACGTGTGGCACACCCACC
TCAAGAAGCGGCTCGACCCCAGCGCGCAGGAGCAGCAAGAGGAGGCCGGCGCCGCCAAGA
AGCGCAAGAAGCCGCCGGCGGCGGCGGCGGCGCCGAGGAAGCGCGACGGCAAGGTCAAGA
TGAGGAACCTCAACGCGCTGACCGCCAGGGCGGCGGCGGCGGCGCCCGTGTCCTCGCCCG
AGCGCTCCGTCTCATCCACGGTCACCGAGTCGACGTCGACCGCCTCGGCGGCGGCGGAGC
AGCACGGCAACTCGGGGAGCAGCTCCGCGTCCGCGTCCGCGTCCGTCAAGGAGGAGTGCT
TCACCTCGTCCGAGGAGTCGGAGGAGTTCCAGATCGACGAGAGCTTCTGGTCGGAGACGC
TGTCCATGCCGCTGGACGACCTCAACGACGTCTGCATGGAGCCCCACGACGCGTTCGGCA
AGCCCGACGGCGACATGGACTACTGGCTCAGACTGTTCATGGAGGGCGGCGGCGGCAGCG
GCAGCGGCAGCGACGACAACAACAACCATGACGGCGCGCTAGACTTGCCACAGATTTAGG
CTCCTGATGAGATGATTTGATCGTTCTTTTTCTCTCTCTCTCTCTACATCTGCGTGCGCC
ATCTTCGCTGCATCGGAGGGATTGCTAACAGGGAAGAGTTTCCGGCCCGCCCCGTGGAGG
AAACCAGTAGCCAGCCAGCAAGAACGCTGATCATGCGCCGGGTAGCTTTCTTCGATCCAT
TTTGGTTAGTCATTTACCTTGTTGTATAGAAGGATGATGATGAGAGATCAGTGTTCAGTG
ATCGGAACCGATGCATTCTCTGTACTATCATGGAGTTTATCTGAAATGGAGTCTGTCTGT
CCGCTTTTCTCAAAAAAAAAAAAAAAAATAATCGATTACTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_1852 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g43680.1	258	4e-75	protein\|MYB family transcription factor, putative, expressed
Brachypodium v1_2	Bradi5g15760.1	270	1e-77
Arabidopsis v10	AT3G23250.1	285	4e-70	\| Symbols: MYB15, ATY19, ATMYB15 \| myb domain protein 15 \| chr3:8309492-8310624 FORWARD LENGTH=285