barSeed - Barley Seed Development Database

Probe CUST_36313_PI390587928

Source Contig U35_6457

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36313_PI390587928	Hv_44K_v2	GTCCACAAAGAGATGGAGTATGTTTGTGTATCGAACTTGCAATTGTTCATGGACAATTTT	1045	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.229	1.480	1.215	0.786	0.328	0.379
Raw	284.501	534.426	385.041	369.139	57.221	71.999

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_2815.5	1550	8e-25	866 - 925	100	60 / 60	plus
JLOC1	JLOC1_2815.1	1018	8e-25	334 - 393	100	60 / 60	plus
Harvest21	ABC17753	666	3e-25	571 - 630	100	60 / 60	plus	ABC17753
Harvest35	U35_6457	1141	3e-25	1046 - 1105	100	60 / 60	plus

Contig Sequence (1141 bp)

>U35_6457 1141 Hv_44K_v2
CCACTTCGACACCGAGGACCCCCGCGAGCGCGAGTACCTCAAGACCGTGCTCCACCGCAT
CTACGGCAAGTTCATGGTGCACCGCCCATTCATACGCAAGGCCATCAACAATGTCTTCTA
CCGCTTCATATTCGAGACCGAGCGCCACAACGGCATCGGCGAGCTCCTCGAGATCCTCGG
CAGCATAATCAACGGCTTCGCCCTGCCCATGAAGGAGGAGCACAAGCTCTTCCTCGGACG
CGCGCTCATCCCGCTGCACAAGCCCAAGTCCGTCGCAATCTACCACCAGCAGCTCTCCTA
TTGCATTGTCCAATTTGTCGAGAAGGACTACAAGCTTGCCGATGCCGTCATCAGGGGGCT
GCTCAAGTACTGGCCAGTCATAAATTGCCAGAAGGAGGTGCTCTTCTTGGGGGAGCTCGA
GGACGTGCTTGAGGCCACACAGCCTGCTGAATTCCAGCAGTGCATGGTGCCGCTGTTTAA
ACAGATCGGACGCTGCCTTAACAGTGCCCATTTCCAGGTTGCTGAGCGGGCTTTGTTCTT
ATGGAACAATGATCACATTGTAAGCTTGATTGCCCAAAATCGTGGTGTCATACTTCCAAT
AATATTTGAAGCACTTGAGAGGAACATACAGAGCCACTGGAACCAAGCTGTTAATGGCCT
GACCGCAAATGTGCGTAAGATGTTTTTGGACATGGATAGTGAGCTATTTGAAGAGTGCCA
GCAGCAGTACATTGAGAAAGTAGCAAAAGCCAAAGAATTGGAGGAGCAACGGGAGTCGGC
ATGGAGACAATTGGAAGCCGTTGCTGCCAAGGCTTCTGGGGATGACATGGTTTTGGTCAA
CTAGGTAATATATTTGTCCCGCTTCATTTCTTTGTTAGTGGTTGCGTCACTAAGCTATTT
TTTTTTAGTCTTGTAAGTTATAACTGTGTCACTGCTGGTAATGCCTCTCCCCGTTATGTC
TTTTCTCTTTGTTTTTAAGCATTCCTATGAGATGCATTACCACCTTCTGTACTGCTGAGT
CTTTGTTTTTAATTTGGTCATGGCAGTCCACAAAGAGATGGAGTATGTTTGTGTATCGAA
CTTGCAATTGTTCATGGACAATTTTTACATTAGTAATTTCAAGCAAAAAAAAAAAAAAAA
A

Homology of Contig U35_6457 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g47790.1	536	2e-173	protein\|transposon protein, putative, unclassified, expressed
Brachypodium v1_2	Bradi1g12470.1	518	1e-178
Arabidopsis v10	AT3G09880.1	499	9e-149	\| Symbols: ATB BETA \| Protein phosphatase 2A regulatory B subunit family protein \| chr3:3029902-3031931 FORWARD LENGTH=499