barSeed - Barley Seed Development Database

Probe CUST_36311_PI390587928

Source Contig U35_6459

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36311_PI390587928	Hv_44K_v2	GCACAGATGTAACTTTGCGAAAACAATTGTAAAGTTGCCCAGAGATGGTATTTCGACATT	699	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367813	2476	2e-24	2388 - 2447	100	60 / 60	plus	ABC13378
MLOC	MLOC_68917.2	1321	2e-24	287 - 346	100	60 / 60	minus	ABC13378 ABC13379
MLOC	MLOC_68917.1	1593	2e-24	336 - 395	100	60 / 60	minus	ABC13378 ABC13379
MLOC	MLOC_68915.2	2251	2e-24	1510 - 1569	100	60 / 60	minus	ABC13378 ABC13379
JLOC1	JLOC1_45644.1	1563	8e-25	1020 - 1079	100	60 / 60	plus
JLOC1	JLOC1_45643.2	2250	8e-25	1504 - 1563	100	60 / 60	minus
JLOC1	JLOC1_45643.1	2253	8e-25	1507 - 1566	100	60 / 60	minus
Harvest21	ABC13378	803	3e-25	45 - 104	100	60 / 60	minus	ABC13378
Harvest35	U35_6459	803	3e-25	700 - 759	100	60 / 60	plus

Contig Sequence (803 bp)

>U35_6459 803 Hv_44K_v2
GCTGTGTACCATAGCCTGTATGATGACTTCACATGGATGGAGAAGTATGGAGATCCCATG
TTCCGCAGGCATGTCGCAGTGGCAAGTGTATGGGGGCTTGTTGCTTTGAGGCTTTCGGAT
GAGGAGATCCTGCCCTTCAACTACAGCTCTTATGCCGCAGAGCTTGAGAATGGCGCGGTG
GATATAAGCAAGAGAATACTAGGAATGCCTGTCAGCTTATCTCCCCTCCACAAGTCGATC
AAACAGTTCAATACAGCGGTGCTGAAAGTGGATTCTGAGCTTCAGGCTCTGCAAACATCG
AAGTTTTGGTCCCTGCGGCGAAACAACCCGTTGAGGATGAGAGATCTGAATGACCGGTTA
ATGATGACTGAGCGGGCCTTCACGGAGCGGGAAGGACTGTCTGGGAGACCATGGTACAAA
CACATGATTTATGGACCTTCACTATACAACGATTATGGAGCGGAAGTGTATCCAGGTGTT
GATGATGCCATTCAGACAGCAAAGAAAACAAACACCTCCCAGTCCTGGCAATCTGTACAG
CATGAGATCCACAGGATTGCTAGAGTCATCAGCCAAGCCGCGTTAGTCCTAAGTGGAGGG
TTGACATGAAGCTTTTTGCTCTGTTGATTCAACTAGCGACCGCAAGTTTGTGCAAATGTC
AATATGTCATCACCAGTTCATATATAAAAGGAAGTCCATGCACAGATGTAACTTTGCGAA
AACAATTGTAAAGTTGCCCAGAGATGGTATTTCGACATTATATTTCAATAAATAATCCGT
TAACAGAAAAAAAAAAAAAAAAA

Homology of Contig U35_6459 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g54010.1	729	5e-109	protein\|peptidase, putative, expressed
Brachypodium v1_2	Bradi2g49510.1	725	3e-119
Arabidopsis v10	AT5G19740.1	681	4e-74	Peptidase M28 family protein \| chr5:6673986-6676767 FORWARD LENGTH=681