barSeed - Barley Seed Development Database

Probe CUST_36310_PI390587928

Source Contig U35_6460

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36310_PI390587928	Hv_44K_v2	GTAGTACTGATAAGCCTTTTGTTCCTAGTTGGAACAAACAAAAATCAACAGTCTGTTAAC	592	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68917.2	1321	2e-24	208 - 267	100	60 / 60	plus	ABC13378 ABC13379
MLOC	MLOC_68917.1	1593	2e-24	257 - 316	100	60 / 60	plus	ABC13378 ABC13379
MLOC	MLOC_68915.2	2251	2e-24	1431 - 1490	100	60 / 60	plus	ABC13378 ABC13379
JLOC1	JLOC1_45644.1	1563	8e-25	1099 - 1158	100	60 / 60	minus
JLOC1	JLOC1_45643.2	2250	8e-25	1425 - 1484	100	60 / 60	plus
JLOC1	JLOC1_45643.1	2253	8e-25	1428 - 1487	100	60 / 60	plus
Harvest21	ABC13379	698	3e-25	47 - 106	100	60 / 60	minus	ABC13379
Harvest35	U35_6460	698	3e-25	593 - 652	100	60 / 60	plus

Contig Sequence (698 bp)

>U35_6460 698 Hv_44K_v2
GTTCATTATTTAAGGTTCCTGAAGCCCTTATCCCTCCAGCAGGTGCCCGTGTTATGTCCC
TAACTGATGGTCTCTCCAAGATGTCGAAGTCTGCTCCTTCAGATCTATCTCGCATTAATC
TTCTTGACCCAAAAGATGTGATTGTGAACAAAATCAAACGCTGCAAAACTGACTCGCTCC
CAGGCTTGGAATTCGACAACCCAGAGAGGCCGGAATGCAGCAATCTTCTCTCAGTATATC
AGATCATTACTGGGAAAACGAAAGAGGAAGTTGTTAGCGAATGCCAAGATATGAACTGGG
GGACATTCAAGGCTACCCTTACAGATGCCTTAATTGATCATCTGCAGCCTATTCAGGTCC
GTTACGAGGAGATCATGTCTGATCCAGGCTATTTAGATACTGTTCTGCTAGATGGGGCAG
GGAAAGCTTCCGAGATAGCAGACGCCACACTCAACAATGTATACCAAGCCATGGGTTTCT
TGCGCAGATAGCATATGTTTCACCATGCAGACCATTTCACAAGAAGCACGGGTTCAACTG
TTTTATAACTGCACAATGCTGCCTTCTTGCACTTGTGTTGGCCTTTCTGCCAGTAGTACT
GATAAGCCTTTTGTTCCTAGTTGGAACAAACAAAAATCAACAGTCTGTTAACGGATTATT
TATTAAATAATAATGTCGAAAATACCATCTCTGGGCAA

Homology of Contig U35_6460 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g54020.2	394	7e-100	protein\|tRNA synthetase, putative, expressed
Brachypodium v1_2	Bradi2g49520.1	400	4e-105
Arabidopsis v10	AT2G25840.2	412	1e-77	\| Symbols: OVA4 \| Nucleotidylyl transferase superfamily protein \| chr2:11021924-11025158 FORWARD LENGTH=412