barSeed - Barley Seed Development Database

Probe CUST_36295_PI390587928

Source Contig U35_6476

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36295_PI390587928	Hv_44K_v2	TCTCTGCTTCACGATCTTCTCCACTGAGCTCGCGAGGAGGAGAGCCGCATCGATCTATTC	104	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375336	986	2e-24	120 - 179	100	60 / 60	plus	ABC18451
MLOC	MLOC_77319.1	2966	2e-24	415 - 474	100	60 / 60	minus	ABC02466 ABC31772
MLOC	MLOC_77318.2	787	2e-24	369 - 428	100	60 / 60	minus	None
MLOC	MLOC_77319.3	1973	2e-24	513 - 572	100	60 / 60	minus	ABC02466 ABC31772
MLOC	MLOC_77319.2	1941	2e-24	415 - 474	100	60 / 60	minus	ABC02466 ABC31772
JLOC1	JLOC1_51565.1	1497	8e-25	1400 - 1459	100	60 / 60	plus
Harvest21	ABC13819	558	3e-25	105 - 164	100	60 / 60	plus
Harvest35	U35_6476	558	3e-25	105 - 164	100	60 / 60	plus

Contig Sequence (558 bp)

>U35_6476 558 Hv_44K_v2
GAGAGAACCCCATCTCAACTCTCAAGCCTCAAGAGCTCACAGTGGATAAGCTCGCGCTCT
GCTCTCACTCCCAGACACACACACACTACACAGCACAGACACTCTCTCTGCTTCACGATC
TTCTCCACTGAGCTCGCGAGGAGGAGAGCCGCATCGATCTATTCCCGACCATGGCTGCGC
GAGCGCTGACCGCCGCCGCCGGCCGCCGGGTGGCCGGCCGGACCGGGACGACGCCGCTTC
TCGCCTCGTGCAGGAACGGGGCCAGCATGAGCCACTCCTCGGCCACGGCCGGCGCGCGGC
GGGAGGAAGAGCCGTACAAGGACGTGCATGGCCCGGCGGCGGCGGCGGCGATGACGGGGG
CGCAGGTGGAGGCGGCGCTGAACCGCAAGAACGTGGAGGTGCTCCAGGGCGAGGAGGAGG
AGGAGGAGCACGTCGCCACGGTGCTGCCGGACGAGACCGTCAGCATCCCTGCCGGTGACG
GCGAGGAGGACGCGTCGTGGGTGCCCGACCAGGACACGGGCGTCTTCGGCCCCGCCCACT
TCGACGCCACCCACGGCG

Homology of Contig U35_6476 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None