- Probe CUST_36295_PI390587928
- Source Contig U35_6476
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_36295_PI390587928 | Hv_44K_v2 | TCTCTGCTTCACGATCTTCTCCACTGAGCTCGCGAGGAGGAGAGCCGCATCGATCTATTC | 104 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | AK375336 | 986 | 2e-24 | 120 - 179 | 100 | 60 / 60 | plus | ABC18451 |
MLOC | MLOC_77319.1 | 2966 | 2e-24 | 415 - 474 | 100 | 60 / 60 | minus | ABC02466 ABC31772 |
MLOC | MLOC_77318.2 | 787 | 2e-24 | 369 - 428 | 100 | 60 / 60 | minus | None |
MLOC | MLOC_77319.3 | 1973 | 2e-24 | 513 - 572 | 100 | 60 / 60 | minus | ABC02466 ABC31772 |
MLOC | MLOC_77319.2 | 1941 | 2e-24 | 415 - 474 | 100 | 60 / 60 | minus | ABC02466 ABC31772 |
JLOC1 | JLOC1_51565.1 | 1497 | 8e-25 | 1400 - 1459 | 100 | 60 / 60 | plus | |
Harvest21 | ABC13819 | 558 | 3e-25 | 105 - 164 | 100 | 60 / 60 | plus | |
Harvest35 | U35_6476 | 558 | 3e-25 | 105 - 164 | 100 | 60 / 60 | plus |
Contig Sequence (558 bp)
>U35_6476 558 Hv_44K_v2 GAGAGAACCCCATCTCAACTCTCAAGCCTCAAGAGCTCACAGTGGATAAGCTCGCGCTCT GCTCTCACTCCCAGACACACACACACTACACAGCACAGACACTCTCTCTGCTTCACGATC TTCTCCACTGAGCTCGCGAGGAGGAGAGCCGCATCGATCTATTCCCGACCATGGCTGCGC GAGCGCTGACCGCCGCCGCCGGCCGCCGGGTGGCCGGCCGGACCGGGACGACGCCGCTTC TCGCCTCGTGCAGGAACGGGGCCAGCATGAGCCACTCCTCGGCCACGGCCGGCGCGCGGC GGGAGGAAGAGCCGTACAAGGACGTGCATGGCCCGGCGGCGGCGGCGGCGATGACGGGGG CGCAGGTGGAGGCGGCGCTGAACCGCAAGAACGTGGAGGTGCTCCAGGGCGAGGAGGAGG AGGAGGAGCACGTCGCCACGGTGCTGCCGGACGAGACCGTCAGCATCCCTGCCGGTGACG GCGAGGAGGACGCGTCGTGGGTGCCCGACCAGGACACGGGCGTCTTCGGCCCCGCCCACT TCGACGCCACCCACGGCG
Homology of Contig U35_6476 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |