barSeed - Barley Seed Development Database

Probe CUST_36287_PI390587928

Source Contig U35_6484

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36287_PI390587928	Hv_44K_v2	AGCATCAGTTGAGGGTTTTTAAAATCCAAGCGGCGATCCATCACTTGCTCTAGCTACTCA	495	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11545.1	697	2e-24	321 - 380	100	60 / 60	minus	ABC13312
JLOC1	JLOC1_7650.1	534	8e-25	202 - 261	100	60 / 60	minus
Harvest21	ABC13312	599	3e-25	45 - 104	100	60 / 60	minus	ABC13312
Harvest35	U35_6484	599	3e-25	496 - 555	100	60 / 60	plus
Harvest35	U35_33032	739	1e-23	581 - 640	98	59 / 60	plus

Contig Sequence (599 bp)

>U35_6484 599 Hv_44K_v2
GCACGAGGAGGTGCTCGTCGACCTCGAGGACAAGGCGGTGTGGGTGGACGTGCCGCCGGT
GGCCGGAGCGCTGGTGGTGAACGTCGGCGACTTCCTGCAGCTCATGTCCAACGACAGGTT
CAAGAGCGTGGAGCACCGCGTGGTGTCCAACGGCGTGGGGCCACGGGTCTCGGTGGCGTG
CTTCTTCCGGACGGACCGCGCCGCGGCGGCGACGAGGGTGCTAGCGCCGATCGTCGCCGT
CCGCGACGAGGCGCGGTACAGGAGCGCGACGGTGGAGGAGGTGGTCCGGCAGTACTACAA
GGTCAAGGGCCTCGCCGGCACCTCTGCGCTTCAGCACTTCAGGCTCTGAATCTCTTCATC
CAGATTGTATCTTTACAATTACGAGACACAAATTAAGAAGTTCAGCAAAGCAGAGCAACA
GCAAGAAGCAGCACAGGATGCAACTATGCAAGCATGTGACAGAGTCTGGACAGCCTGAAA
AAGACTGAAATTTGAAGCATCAGTTGAGGGTTTTTAAAATCCAAGCGGCGATCCATCACT
TGCTCTAGCTACTCACGCCGACTTTTCGCTTTAACCCTTTCGGCAAAAAAAAAAAAAAA

Homology of Contig U35_6484 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None