barSeed - Barley Seed Development Database

Probe CUST_36280_PI390587928

Source Contig U35_6491

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36280_PI390587928	Hv_44K_v2	GGATCGGCTCCAACCTTATTCTGGTTGTTTGAGTGATACAAACAAAAATCTGCTTGCAAA	788	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.620	1.648	1.264	0.861	0.393	0.437
Raw	3077.410	4999.770	3299.230	3523.020	565.277	682.992

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC20254	862	3e-25	789 - 848	100	60 / 60	plus	ABC20254
Harvest35	U35_6491	862	3e-25	789 - 848	100	60 / 60	plus

Contig Sequence (862 bp)

>U35_6491 862 Hv_44K_v2
CAAATCTATTTCCAGGATTTTCAAGTGACCAGAGTAAAAGCAAGGTGGAGAAGATCAAGT
CTTCCGTGGTACTGCCTTTCCATCATTTCTCAGGTGGTGCAAATCCTGCAGCAACTAGCC
TTCCAGTAGCAAAATCGGTGGAACCTGAAGCGGAAATCATGTGCGATGATCCTGCTTCTC
AGATGGAGGAAGTGATCCAGCTGGACACTGGAACAGATGACCCAGAAAACGGCAACGCAG
ATGGACAGAGCGAGTGCAAACCTGGAGACACTGATGTGTCTAGCTCCCCTCCTGAGCTTT
CCTCTGGCATCGAGCAGCGCTTCAGACCCCTCAACGAGAGCAGAGACCTTCAACAGAAGC
ACCAAGCACCGGAAGAACCAGAATTTAACGACCAGCTTAAGGCCTTTGATTATGCTGAAG
CTAGAAAGAATACTTCATTTGGAGAGGTTAGATCTGAGAGAAGAAAGGACAATGCAGTGG
CCAGGGCAATCAATGCGGATTCTGGAGATAAACGTAGAAGTTCGAAACAAATCCCGGGTG
GCGGCGAAGAGGATGAGGGGAATTTCCAGAATCCACGAAGGCGACAGGCTTTCCCACCTT
CGGGCAACAGGAGTGCCACGTACCATTAGTTAGTGGAGAGATGTACTACCGGACCGAGGC
ATTGTATGTAACCTAAAGAGTACAGGTTGAAGTGGAACAGCGCGCATGATTTGGCATTTC
TCGGCAAGTCATTGGAAATGCTGTTCTGTGAGATACTATGGACGCCTGTTTGACGGCCAA
CACAAAATGGATCGGCTCCAACCTTATTCTGGTTGTTTGAGTGATACAAACAAAAATCTG
CTTGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_6491 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g30100.1	903	6e-67	protein\|3-5 exonuclease family protein, putative, expressed
Brachypodium v1_2	Bradi3g27252.1	907	6e-93
Arabidopsis v10	None