barSeed - Barley Seed Development Database

Probe CUST_36226_PI390587928

Source Contig U35_1934

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36226_PI390587928	Hv_44K_v2	ATTTGAGCTCGTACGAGTGTGTGGTTCGCATGATTCAAGCTTTGTGCAAGAATCGATGCA	1062	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363796	1758	2e-24	1610 - 1669	100	60 / 60	plus	ABC01224 ABC01226 ABC01227
JLOC1	JLOC1_23828.2	1884	8e-25	1686 - 1745	100	60 / 60	plus
JLOC1	JLOC1_23828.1	1748	8e-25	1550 - 1609	100	60 / 60	plus
Harvest21	ABC01227	1760	3e-25	1593 - 1652	100	60 / 60	plus	ABC01227
Harvest35	U35_1934	1228	3e-25	1063 - 1122	100	60 / 60	plus

Contig Sequence (1228 bp)

>U35_1934 1228 Hv_44K_v2
GGTGGACCGAGGAAAGCAGAGCCTTGAGACAATATGCCTTCTTTTGGCTTATAAGGTCAA
GTATCCTGAGAACTTCTTTCTTCTAAGGGGCAACCATGAATGTGCATCAGTAAACCGCAT
CTATGGATTCTATGATGAGTGCAAGCGCAGATTCAGTGTAAAACTCTGGAAAACGTTTAC
AGACTGTTTTAACTGCTTACCGGTATCAGCATTGATAGATGAAAAGATTCTATGCATGCA
TGGAGGTCTTTCTCCAGAGTTGAACAAGCTGGATCAAATACTCAACCTCAATCGCCCCAC
AGATGTTCCTGATACCGGGCTACTTTGTGACCTTCTTTGGTCCGATCCTTCCAATGAAGC
GCAAGGGTGGGCTATGAATGATCGAGGTGTCTCATATACATTTGGACCTGATAAAGTGGC
TGAATTCCTTGAGAAGCATGATTTAGACCTCATCTGCCGAGCCCATCAGGTTGTTGAGGA
TGGTTACGAGTTCTTTGCTGATCGTCAGCTAGTTACAATATTTTCAGCGCCTAATTACTG
TGGGGAATTCGATAATGCCGGTGCCATGATGAGTGTAGACGAGACGCTGATGTGCTCCTT
CCAAATACTCAAACCTGCAAGGAAAATGTTGCCTGGTTCGACTAATAACAAGTCTGGCTT
CAAGTCAATGAGAGGATGGTGACGGTGGCACGGCGATTGGTGAGCAAGCTGTGGTCTGAT
CTGCTGGCAGGCACGTGCCTACCATGAGCGGCTGCGACTAACCGGCGTTTTCGCCGACAG
CTCGGGCCCGGACCGGGACAAGAACGCAGATTGTACAACTCTCTCGTCGATGGACTGTAC
ATCGTTCATGTTGGATTAACACTTGTTGTAATGTATTATTGTTTTTCTACCGTGCGGATC
TCTTTATCGTGAATGAAACTGTTTCTCCTCCTCCCCCCCTTCCAAATTCAAAGGGATCAG
ACAGGCTACGCCAATAAAAACAGCTAAGAGTCCAGATTGCTGGCGTGTGATCATAACAGA
CGGGAGAAACATCGCCTGCTGTTTATGAACCAGCTCGACTGAATTTGAGCTCGTACGAGT
GTGTGGTTCGCATGATTCAAGCTTTGTGCAAGAATCGATGCACCCGCATCATCGTCCTTG
CTGTTCCATTTTAACTGTGTTGGTCTATTTGGTATATTTATTAGGTAGTGAGAATGTAAG
ATTTCTCCATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_1934 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g57450.2	317	3e-162	protein\|Ser/Thr protein phosphatase family protein, putative, expressed
Brachypodium v1_2	Bradi3g55620.1	532	2e-161
Arabidopsis v10	AT2G39840.1	321	5e-135	\| Symbols: TOPP4 \| type one serine/threonine protein phosphatase 4 \| chr2:16627430-16628789 FORWARD LENGTH=321