barSeed - Barley Seed Development Database

Probe CUST_3620_PI390587928

Source Contig U35_16138

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3620_PI390587928	Hv_44K_v2	TTTTTTCCCTGGCCGGTCTATCTCCCTGTATCTGGTTTTCTGAAACTATACATGGCTCCT	1182	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.162	1.370	1.320	1.050	0.483	0.500
Raw	6488.270	11702.817	9926.633	12286.797	2027.223	2269.250

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65333.1	4465	7e-23	3140 - 3199	98	59 / 60	minus	ABC07149 ABC15125
MLOC	MLOC_65333.2	7376	7e-23	2064 - 2123	98	59 / 60	minus	ABC07149 ABC15125 ABC15825
JLOC1	JLOC1_42990.1	4604	4e-23	1429 - 1488	98	59 / 60	plus
Harvest21	ABC07149	1353	1e-23	1128 - 1187	98	59 / 60	plus	ABC07149
Harvest35	U35_16138	1474	3e-25	1183 - 1242	100	60 / 60	plus

Contig Sequence (1474 bp)

>U35_16138 1474 Hv_44K_v2
ATTCCTCGAGCACTGTTGGCCTATCCACATCCCCCCTCCACCTTCTTCCCCAAACGCCCA
CTTCCAGCCTGCGCCACCGCACACAGATCTAAACCCACCCCCACGCCCACCGGCGGCGAG
CGGCGGCGGCGAGGCAGCCAGCGAAGATGCAGTACAACAACCTGGGCCGGTCGGGGCTGC
GGGTGAGCCAGCTGTCCTACGGGGCGTGGGTGACCTTCGGCAACCAGCTGGACGTCAAGG
AGGCCAAGTCCCTCCTCCAGGCCTGCCGCGACGCCGGGGTCAACTTCTTCGACAACGCCG
AGGTCTACGCCAACGGCCGCGCCGAGGAGATCATGGGCCAGGCGATCCGGGACCTCGGCT
GGCGCCGCGCCGACGTCGTCATCTCCACCAAGCTCTTCTGGGGCGGCCAGGGGCCCAACG
ACAAGGGCCTCTCCCGCAAGCACATCGTCGAGGGCCTCAAGGCCTCCCTCAAGCGGCTCG
ACATGGAGTACGTCGACGTGGTGTACGCGCACCGCCCCGACGCCACCACGCCCATCGAGG
AGACGGTCAGGGCCATGAACTGGGTCATCGATCAGGGCTGGGCCTTCTACTGGGGCACGT
CCGAGTGGAGCGCGCAGCAGATCACCGAGGCGTGGGGCGTCGCCAACCGGCTTGACCTCG
TCGGGCCCATCGTCGAGCAGCCCGAGTACAACCTCTTCTCCCGCCACAAGGTTGAGTCTG
AGTTTGTACCTCTTTACAGTACTTATGGCATTGGGTTGACTACATGGAGTCCTCTAGCTT
CAGGAGTTCTCACTGGAAAATATAGCAAAGGCAATATACCTCCTGAAAGTCGGTTTGCCC
TAGATAACTACAAGAACCTGGCAAACAGGTCTCTGGTTGACGACACGCTTAGGAAAGTGA
ACGGGCTCAAACCGATCGCTTCCGAGCTCGGGGTCTCGATGGCCCAGCTGGGTATCGCGT
GGTGCGCGTCTAACCCCAACGTGTCGTCCGTGATCACCGGGGCCACCAAAGAAAGCCAGA
TCGTGGAGAACATGAAGGCCCTGGAGGTCGTCCCGCTGCTGACTCCGGAGGTCCTGGAGA
AGATCGAGGCGGTCATCCAGAGCAAGCCCAAGCGCCTCGAGTCGTACAGATGAAGCACTC
GGTTTTATCGGCTGTGCAGCGTGTGCCCTCCACATGGTGGGATTTTTTCCCTGGCCGGTC
TATCTCCCTGTATCTGGTTTTCTGAAACTATACATGGCTCCTCCTGTGTAGTCGGTGTGT
TCAGCGTGTGAAACATTTTGTTGTCGAGTGGGCCTGATGAGGACGACGCCATTTGTCATT
TGTCACGGACGCTTCCTGCGTGTGCTGCTGTCCCGTGTGTGTTATCATTCGTCGGCATCC
TTTCGTGATTCCAAAAAAAAAGAGCGTTGTGCCTGGACCGTTTCTCCACTGTGTCTGTCT
TTTGGTTGGCTGATGGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_16138 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g57240.1	329	protein\|oxidoreductase, aldo/keto reductase family protein, putative, expressed
Brachypodium v1_2	Bradi3g55400.1	329
Arabidopsis v10	AT1G04690.1	328	\| Symbols: KAB1, KV-BETA1 \| potassium channel beta subunit 1 \| chr1:1313662-1315420 FORWARD LENGTH=328