barSeed - Barley Seed Development Database

Probe CUST_36207_PI390587928

Source Contig U35_1954

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36207_PI390587928	Hv_44K_v2	CTTGAATAATCCGCCATGCCATCAGTGTACATGATTGTTATTTTATCACTAGCACTTTTA	1681	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74261.2	1659	2e-24	1558 - 1617	100	60 / 60	plus	ABC04951 ABC08031
JLOC1	JLOC1_49482.2	1812	8e-25	1706 - 1765	100	60 / 60	plus
JLOC1	JLOC1_49482.1	1664	8e-25	1558 - 1617	100	60 / 60	plus
Harvest21	ABC04951	1590	3e-25	1446 - 1505	100	60 / 60	plus	ABC04951
Harvest35	U35_1954	1826	3e-25	1682 - 1741	100	60 / 60	plus

Contig Sequence (1826 bp)

>U35_1954 1826 Hv_44K_v2
TTGCGCGTCCCTTGAACTCGTCAAGCTAAATTCAGTCCCCAATCTCGTTCTAATGGCAAA
CCCCAATTCGAAGCTCGACTCGAATCCAGATTATCCAGCCGCCCGCCTCTGGCAGTAGCC
AAGAAGAATCAAGATCCATCTTTTTAGCAGTTCTTTAGATTGCGCAGCTCAATTTTGATC
GAATTACGCAGCACTGAATCTGATACAGCGACACGATTGTCAACCATGTCCGCGAAATTC
ATTTTTTGTCTTGGTCTCGGTGTTGCAGCTAGGCCATGGCTTCCACCGTCCCCTTCTCCC
CGGCTAAGGTCCAGATGTTCCAGGCGACCAACTGCCACGGGCACGCGGGCTTCGGCAGCT
CTTTCGCCGTCCCAAGAACCGGACCAAGGCCGCGTTCCGTGGCCGTCAGGGTCAGCAGCG
AGCAGGAGGCGGCCGCCACCGTCAGGGCGCCGTCGGGGAGGAGCATCGAGGAGTGCGAGG
CCGACGCCGTCGCCGGGAGATTCCCCGCCCCCGCTGCGTTTGTCAGACCGAAGGCCCCCG
ACGGCACGCCTGAGATCAGGCCTCTCGACATGGCGAAGCGTCCTCGTCGCAACCGCAGGT
CGCCGGCTCTTAGGGCTGCATTCCAGGAGACAAGCATCTCGCCCGCTAATTTGGTGCTCC
CATTGTTCATCCATGAAGGGGAAGAGGATGCTCCAATTGGCGCCATGCCTGGTTGCTTTA
GGCTTGGATGGCAGCATGGGCTTCTTGCTGAGGTGTATAAGGCACGCGATGTTGGTGTTA
ACAGCTTTGTGCTCTTTCCAAAGGTTCCGGATGCATTGAAGTCTCCAACAGGAGTTGAAG
CATACAATGACAATGGTTTGGTTCCACGGACAATTCGCCTGCTCAAGGATAAGTTCCCTG
ATATCATTGTCTACACAGATGTTGCTTTGGACCCTTATTCATCTGATGGACATGATGGCA
TCGTGAGGGAAGATGGAGTAATTCTGAACGATGAAACAGTATATCAGTTGTGCAAACAGG
CAGTTTCACAGGCACGAGCTGGTGCTGATGTGGTTAGTCCTAGTGACATGATGGATGGTC
GTGTTGGAGCAATCCGTTCTGCTTTGGATGCTGAGGGTTTCAATGATGTCTCCATTATGT
CCTATACTGCAAAGTACGCCAGTTCATTTTATGGGCCATTCCGAGAAGCTTTAGATTCAA
ATCCACGATTTGGGGACAAGAAGACCTATCAGATGAACCCAGCTAACTACAGGGAGGCCC
TTCTAGAAACTGCAGCAGATGAGGCAGAAGGGGCTGATATTCTTCTAGTGAAACCTGGAT
TGCCGTACTTGGATATCATCCGACTTCTCCGGGATAATTCCGCACTGCCAATTGCTGCAT
ACCAGGTGTCGGGCGAGTACTCGATGATCAAGGCCGGCGGGGCGCTGAACATGATCGACG
AGGAGAAGGTGATGATGGAGTCGCTCATGTGCCTGAGGCGAGCCGGCGCCGACGTCATCC
TCACCTACTTCGCCCGCCAGGCCGCCGCCGTCCTCTGCGGCATGGGATCCGCCAAGTAGA
AGTACTGGTACGTAGATCGGATCAACCGGTCAACCCCCCTGTGATTAAAGATTTGAGATG
TAGAGCTCAGCCGAGGAGCCAATGGGCTTGAGTTGTTGGCCTTGACGTTTGACCCTAAGC
ACTTGAATAATCCGCCATGCCATCAGTGTACATGATTGTTATTTTATCACTAGCACTTTT
ATTTTTTTTAAAAACCGAGTATGCATGANTTTTTTTTATCCCAGTCCGATCCGATCGCAT
GCTCCTGGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_1954 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g49110.1	427	protein\|delta-aminolevulinic acid dehydratase, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi0009s00210.5	428
Arabidopsis v10	AT1G69740.1	430	\| Symbols: HEMB1 \| Aldolase superfamily protein \| chr1:26232197-26234713 FORWARD LENGTH=430