barSeed - Barley Seed Development Database

Probe CUST_36173_PI390587928

Source Contig U35_50693

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36173_PI390587928	Hv_44K_v2	ACAGAAGTTCCATAGACTAATTATGTCCACCTAGTATAGCTACCCAATGGTCGGAAGCTT	2746	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.974	0.813	0.720	0.611	1.345	2.237
Raw	3.083	3.092	2.817	4.530	3.834	8.516

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_460.1	1434	2e-24	562 - 621	100	60 / 60	minus	ABC28925 ABC49398 ABC53003
Harvest21	ABC53003	2806	3e-25	2747 - 2806	100	60 / 60	plus	ABC53003
Harvest35	U35_50693	2806	3e-25	2747 - 2806	100	60 / 60	plus

Contig Sequence (2806 bp)

>U35_50693 2806 Hv_44K_v2
GAATTCACAAATTTGGCGTACATTTTGAAGATTATATAGCTATCATAATTTCTAGAGTTG
CATAAAATGCGAAGAGACACTGTCCCAAAGAGACCATGCGAAACTCAACATAGATGCATC
GTTTGATCCTTGACTCATATCAGGGTGTTTTTGGAGCGGTGATAAAGGGTAACAATGTAA
AATTCTTTGCAGATACACATGGGAAGGTTGATTCCAGTTATAATGCTTTTATAGTAGANC
CCCTATCCTGAAGGTTTGGTCTAAATCTTGCACATATGAGCGGATGCAATAAATTTGAGA
TCAATGAGGATAATATAGAAGTGATCACTACCATCAAAGAGGGGAGCTTGTCGTTCATTG
CAAGTGCTATTTTTGATGACTGATATTTTTACGCCCTTAGACTTTAACTCATATAATTTA
ATGAACCCCGTTATATGGAAACCAACCATCTTTGTACATGAATTGGCTAGACTGGATATA
TATTCCCGTCCTAATCTTTTCTTACAGTCTACCCTTGAGGAAATTGTCCCCATGGTTGTA
AAAATGCGATGATTCTTATGAATGAATAAAGGAGATTGAAGTTTTAAAAAACATCCTACA
TCCAACACGGATAATATATTAATTTTAGTGTGACCAACACTAATTTTAATAAAAGCTTAC
AAACTTAATCCCACTCAAGCTATGCCTATCTGGATATGACTACATAAAGTAGAGCATCAC
AAACTAAATTCCAAAAAGAGGCAAAATCTGGATTAATGTGTGTAGTGTAAAGTGAAAAAA
TGAGTCATCATTCATTATCAAGCATGCCTTACAACGAGACGATACGTGCAACAAAAAGCA
ACTATGATGAGCAATCCAAAATCACACAAGTAAAGTAGTACTACCAAATACAACATACCA
AACGATTAGTTGGATAATCTTAGGAGTACTTTTTCAAAAAGAAAGGGCAAGGATGAAATT
ATACCATACCATGACAGCTATAAATAAACATGCACCATCATGGTTGCCCTCCATCATCCA
AACTGCACACACCAAGATCAGAAACATCAATTCCAAGAAAGCAATAGTAACCACAAATCC
AACATGAAGACCTTCCTCACCTTTGTCCTCCTTGCCATGGTGATGAGCATCGTCACTACC
GCTAGGCAACTAAACCCTAGCAGCCAAGAGTTGCAATCACCACAACAATCATATCTGCAG
CAGCCATATCCACAAAACCCATATCTACCGCAACAACCATTTCCAGTGCAGCAACCGTTT
CACACACCCCAACAATATTTCCCCTATCTACCAGAGGAATTGTCTCCCCAATATCAAATA
CCAACCCCCCTACAACCACAACAACCATTCCCCCAACAACCACAACAACCTCTTCCTCGG
CCCCAACAACCATTCCCCTGGCAACCACAACAACCATTTCCCCAGCCCCAACAACCAATT
CCCTACCAACCACAACAACCATTCAACCAGCAACCACAACAAATAATATCCCAGCAACCA
CAACAACCATTCCCCCAACAACCACAACAACCTTTTCCTCAGCCCCAACAACCATTCCCC
TGGCAACCACAACAACCATTTCCCCAGCCTCAACAACCATTTCCCCTGCAACCACAACAA
CCATTCCCCTGGCAACCACAACAACCATTTCCGCAGCCCCAACAACCTATTGCGCACCAA
CCACAACAACCATTCTCGTTCTCGCAGCAACCACAACAACCATTCCCTCTGCAACCGCAA
CAACCATTCCCCCAACAACCACAACAACCATTTCCCCAACAACCACAACAAATAATTTTC
CAGCAACCCCAACAATCATACCCTGTGCAACCTCAACAGCCATTTCCTCAACCCCAACCA
GTCCCCCAGCAACGACCCCAACAAGCATCCCCCCTACAACCGCAACAACCATTTCCCCAG
GGATCAGAACAAATAATTCCCCAGCAACCTCAACAACCATTCCCTCTGCAGCCACACCAA
CCATATACACAACAAACCATCTGGAGTATGGTCTAGTCATCAGGGGCCTATGAAGCGACA
AGTTGTAATACTAAATGGGTGGATCATCATCCTTTAGTCAACGGAGTGTTTAATGTAATG
ATGATAAATAAAGTGATGTGCACCATCATGTGTAACCCCGACCTATACTAGTTCAAATGA
GAATAAAAGACAAAGAAAGTTCTTGTCACAAGGACAGTGCTGGTAATTATTAAATTNGTG
CCATATTTAGATTTTCAACCCTAACTACANTTTGAGTGATATCCATTATCTGCCTATTTA
TGATGTGAAGTCCTATGAGCCTAACATAATTAACGGTTGATAGCTTGGTTTGAATTGAAT
TATTAGCAAATAAGGAGTAATTAATAATTGCAAATTATCCCTTCGATGTCTAGCCATATG
AATTGTGTGACCTTATCGTTTGTAATGATTCTAGATTGTACATATACATTTTCCTAATTG
TTGAGTGACATATGAAGCAACATATGGTGACCGACCACTGGTCTCGGGTGTAAATCTCAG
TAGCACCTTTATATCGAGGGGAGTGAGATGATGATGACTTCGTGTGGAATTTTGTAGTTA
TTTAAATAGTTTCTAAAATGGACCGGTTGCTCATATTAGAAAATATGGGCTTGCGCCATA
TCGAGTTTTTGGAAATGGACAAGATGAAGGGATGATTGAATTTATGCCTTCTATTTCTCT
TGCACATGAAACTTGAGATTGAATATGGTGGCATTACAAGTTACTTACAGAAGTTCCATA
GACTAATTATGTCCACCTAGTATAGCTACCCAATGGTCGGAAGCTT

Homology of Contig U35_50693 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None