- Probe CUST_36166_PI390587928
- Source Contig U35_48381
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_36166_PI390587928 | Hv_44K_v2 | TGAGAGACCACTCCTATCTCATGTTTGTGCTTCTCCGTAATAGGTTTACCTTCTCTGGGT | 557 | GeneList: white MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.167 | 1.336 | 1.943 | 1.446 | 0.407 | 0.439 |
| Raw | 20.527 | 37.764 | 45.908 | 55.063 | 3.774 | 5.576 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK251360.1 | 2010 | 2e-24 | 1557 - 1616 | 100 | 60 / 60 | plus | ABC02848 |
| MLOC | MLOC_23052.1 | 2566 | 2e-24 | 1212 - 1271 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_23051.1 | 861 | 2e-24 | 52 - 111 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_23052.3 | 280 | 2e-24 | 174 - 233 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_23052.4 | 1040 | 2e-24 | 174 - 233 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_23052.5 | 796 | 2e-24 | 54 - 113 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_23052.2 | 2469 | 2e-24 | 1102 - 1161 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_18500.1 | 148 | 3e-21 | 7 - 66 | 97 | 58 / 60 | plus | None |
| JLOC1 | JLOC1_15940.10 | 1844 | 8e-25 | 688 - 747 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15940.9 | 1636 | 8e-25 | 781 - 840 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15940.8 | 989 | 8e-25 | 134 - 193 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15940.7 | 1290 | 8e-25 | 134 - 193 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15940.6 | 2021 | 8e-25 | 865 - 924 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15940.5 | 2368 | 8e-25 | 1212 - 1271 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15940.4 | 2146 | 8e-25 | 1291 - 1350 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15940.3 | 1259 | 8e-25 | 103 - 162 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15940.2 | 2018 | 8e-25 | 862 - 921 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15940.1 | 1381 | 8e-25 | 225 - 284 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC50096 | 740 | 3e-25 | 558 - 617 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_48381 | 740 | 3e-25 | 558 - 617 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_35561 | 684 | 1e-23 | 579 - 638 | 98 | 59 / 60 | minus |
Contig Sequence (740 bp)
>U35_48381 740 Hv_44K_v2 CATATTAAACAGGTAGATTTATCAAATACANNATAGAAGATTAGTCTCCGAATACAATTC ATCATATNTAGTCTCCTAATACAATTCATCATATTAGTCTGCGAATACAATTCATCAATA ATGCTAAAACAGGGTACTATATAAACACTCTTATATTTTTTCCATAGCGAGAGACAAATG AGACAACAAACAACGAGCGAGTAGGCCAGAGACAATTTGGCATGATATGCAACCTGAGAG CGACAAAAACAAAGCATGGATTCCAATGGTGAACTATGAGGTGCAACTCGACGGGAAGGA CCGAAGGGCTCGGAGATGCATTAGGCACGGGAAATGTGCATCTCATAAAGAGATCCAATG TTCCAGCAGGAACCAGGCGCTCCCCCTTCCTAACTGCGCCATTCAGTAGCATAGCCCGAG CTTTGGAGGCATTGGGGGTAGACAAAAACATGTATAGAGTGTAGACTTCATCCTTCCTTC CACTACTGCTTCTCCAAGAGGATTGGCCAGAGGAAATCTCAGCAGCTCCACTCCCTGTCA GCAACGGACAATTAAATACCCAGAGAAGGTAAACCTATTACGGAGAAGCACAAACATGAG ATAGGAGTGGTCTCTCAATCAACTTCAGACCCCGCACTAAGATATCATTAAAAGCTGCAG GAAAGGAACCCACGATGAGAAATTCAGCATTATAGAAGGGCATAACCTTATGTAACANAT ACAAACTATACAAATACAAA
Homology of Contig U35_48381 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |