barSeed - Barley Seed Development Database

Probe CUST_36130_PI390587928

Source Contig U35_7327

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36130_PI390587928	Hv_44K_v2	TCCTCAACAAATCTGGATTTTAGGAGCTCTTCCTGTACTTTTTAATATGCTCCCTGGCAA	603	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37909.1	1227	2e-24	667 - 726	100	60 / 60	plus	ABC18104
JLOC1	JLOC1_24594.3	1898	8e-25	1456 - 1515	100	60 / 60	plus
Harvest21	ABC18104	666	3e-25	4 - 63	100	60 / 60	minus	ABC18104
Harvest35	U35_7327	666	3e-25	604 - 663	100	60 / 60	plus

Contig Sequence (666 bp)

>U35_7327 666 Hv_44K_v2
AAAAGCAAAGAAGAGGTTGACAAAGTTATTGACAGATGTGTTGGTGCTGGGGATTTGCGG
GAGGATATTCTGCAATACAGGAAGGCATTGCGAGATTGTTCACATGATGATGATGATGAC
GAGGCACGGTCATATCTCATGGATATGGGGACTAAAGCTTTGAGGCGTTACTTCTTTCTG
ATAACATTTAGGTCCTACGTCCATTGTACATCCTTGCATGAAGTAACATTTGCATCATGG
ATGGAGGCTAGGCCCGAACTAGGCCACCTCTGCGATAACTTAAAGCTGGATAGATAGAAT
ATACCTTGGTCATTATTGTGGAAGTCGTGGGACTGGTGGACCGTGGACTCACCGTGTATG
CACTAGAGAAGGTGGTACGGAAAGAGATGAATAAGGAGGATACATGATCTCGAAGGAGTA
TGTAATGGCTGAAAGAGGGACATTGTATTGAACTTGCTTCTGCTAATTAATAGAGGCAAG
CATGCATATACATTCAAGCTTGTAAGTTGGAGTAGGACAGTAAAGTTGAACTTTCCGATC
TACATGTTTTCCACTGCTTGCAAATTATAGTGTACTAGCTCATTTAGATGCATGGCCTTC
TTGTCCTCAACAAATCTGGATTTTAGGAGCTCTTCCTGTACTTTTTAATATGCTCCCTGG
CAATAT

Homology of Contig U35_7327 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g15377.1	1257	2e-54
Arabidopsis v10	None