barSeed - Barley Seed Development Database

Probe CUST_36124_PI390587928

Source Contig U35_7333

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36124_PI390587928	Hv_44K_v2	TTCGCCTTGTTATGGGAAAAGCAGAATCAAATGACCCAGAAGTGCTCAAACAGCTACACC	1234	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363985	1712	2e-24	1175 - 1234	100	60 / 60	plus	ABC34524 ABC37229
MLOC	AK366202	1905	2e-24	1246 - 1305	100	60 / 60	plus	ABC34524 ABC37229
MLOC	MLOC_61514.7	922	2e-24	39 - 98	100	60 / 60	plus	ABC04419 ABC34524 ABC37229
MLOC	MLOC_61514.2	1487	2e-24	1062 - 1121	100	60 / 60	plus	ABC37229
MLOC	MLOC_61514.1	1966	2e-24	1068 - 1127	100	60 / 60	plus	ABC04419 ABC34524 ABC37229
MLOC	MLOC_61514.4	1083	2e-24	1007 - 1066	100	60 / 60	plus	None
MLOC	MLOC_61514.3	1484	2e-24	1062 - 1121	100	60 / 60	plus	ABC37229
MLOC	MLOC_61514.5	2112	2e-24	1001 - 1060	100	60 / 60	plus	ABC04419 ABC34524 ABC37229
MLOC	MLOC_61514.6	2115	2e-24	1001 - 1060	100	60 / 60	plus	ABC04419 ABC34524 ABC37229
JLOC1	JLOC1_40205.4	3697	8e-25	859 - 918	100	60 / 60	plus
JLOC1	JLOC1_40205.3	3799	8e-25	1068 - 1127	100	60 / 60	plus
JLOC1	JLOC1_40205.2	3901	8e-25	1060 - 1119	100	60 / 60	plus
JLOC1	JLOC1_40205.1	3906	8e-25	1068 - 1127	100	60 / 60	plus
Harvest21	ABC15591	1295	3e-25	1235 - 1294	100	60 / 60	plus
Harvest35	U35_7333	1295	3e-25	1235 - 1294	100	60 / 60	plus

Contig Sequence (1295 bp)

>U35_7333 1295 Hv_44K_v2
TGGTCAGCGGCCCATCGCTGTCTCCCCCCTCCGCATCACACCCGCATGGCCGCCGCCGGG
TTCCGGCTGGGCCAGCGCGTGCACGCGTCCGGCGACCCCCGCCGGACCGGGACGGTGCGC
TACCTGGGCCCCGTCGACGGCCACGCGGGCGACTGGGTGGGCGTCGACTGGGACGGCGGT
GCCGGAGGTCGCCACGACGGCTCCCTCGCCGGCCGCCGCTACTTCTCCGCCGCGGCCGAC
CGCTCCGCCTCCTTCGCGCGCCCCTCCGCGCTCAGCGCCGGGATCCCGCTCCCCGACGCC
CTCCGCCTCCGCTACCGCGTCGACGACTTCACCAAGGAGGAACAAGATGAAATGTACGTC
TTCTCGACGAGCCAGAAGCGCGTGTCGGTGGAGCTGGTCGGGACGAACAAGGTCCGGGAC
AAGCTCAAGAACTTTGACGAGCTGCTGTGTGCGTCCGTTTCCTTCATGGGCGTGAGCTCG
GCTGGATCGCCGGAGGAACTGCAGGGCTTGGTTCCGAATCTCAGGCAACTTGATTTAACT
GGAAATCTCATTTCGCAGTGGCAAGATATATTCTCTCTGTGTCAAGCTCTGCCATCTCTG
GAAGTTCTCGATTTGACAAACAACATCATGGAGAATGACTTTGTAGAAAGTCCATTGCTG
AAGAATATTCGTATTTTGGTCCTCAACAACTGTGGTGTAACCTGGGAACTGGTTGAAAAG
CTTAAAGTTCCATTTGCATGTCTCAGCGACCTCCACCTAATATGGAACAAGATGAACATA
ATCACGACCCCAGTTGGAAATTTTGTGCAAGGTTTTGACACACTGCGGCTCTTAAATTTG
GAAGACAATCACATTGTTTCATGGGATGAAATTGTAAAACTTTCTTATTTAAAAAGCTTG
GAACAGCTCCATTTGAACAAGAACAAGATAAAGCATGTAAGATACCCGTCTAATCTTCCA
TCGTCAGGCCCTCTTGGTGATGTATCTGTTCCGGCCTTCGAAAAATTGCATGTCCTTTTA
TTAGGATCTAATGAAATAGAAGACTTTCCTTCTGTGGATTCACTCAACCTCTTCCCAAGT
TTAATGGATGTCAGGATTTCTGATAATCCTATAGCTGATCCTGCCAAGGGTGGTGCTCCT
CGATTTGTGCTTGTTGCTCGACTAGGAAATGTTAAAATACTAAATGGCAGTGAGGTAAGC
GCACGTGAACGGAGGGAAGCAGAAATACGATACATTCGCCTTGTTATGGGAAAAGCAGAA
TCAAATGACCCAGAAGTGCTCAAACAGCTACACCC

Homology of Contig U35_7333 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g01500.1	547	0.0	protein\|tubulin-specific chaperone E, putative, expressed
Brachypodium v1_2	Bradi2g39750.1	534	0.0
Arabidopsis v10	AT1G71440.1	531	5e-106	\| Symbols: PFI, TFC E \| tubulin folding cofactor E / Pfifferling (PFI) \| chr1:26921271-26924373 REVERSE LENGTH=531