barSeed - Barley Seed Development Database

Probe CUST_36095_PI390587928

Source Contig U35_1506

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36095_PI390587928	Hv_44K_v2	GTTGTTGATGGTTACGAAACTGTCACTTTGCTGTGGGTATATTAGGCGAGTTCGATAGCA	967	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365985	2341	2e-24	1847 - 1906	100	60 / 60	plus	ABC04183
Harvest21	ABC04182	1027	3e-25	968 - 1027	100	60 / 60	plus
Harvest35	U35_1506	1027	3e-25	968 - 1027	100	60 / 60	plus

Contig Sequence (1027 bp)

>U35_1506 1027 Hv_44K_v2
GGCTGCAGGAATTCGGCACCGAGGCCAAGCTGATTTCAGGGTCAAGTGAAGGTGGAGCAG
CGGTATTCAAACTTGAATATAAGAATGGCAAGACTGCTTGTTTAGCACAATCCCCTCAGC
TGCACAAGCAGATGGCAATCTGCGGTGGGCTTCGTCGTGTATTTGAGGTTGGACACATAT
TTCGAGCCGAAGACTCCAACACACATAGGCATTTGTGTGAGTTTGTTGGTATGGATGCTG
AAATGGAGATTATGAGACACTACTTTGAGGTTTGTGATATTGTGGATGGATTCTTTGTAG
AATTGTTCAGACACTTGAATGAAAATTGCAGGACGGCACTTGAGGCAGTTAATAGGCAGT
ATCCATTTGAACCACTGAAGTACCTAGAGAATACCTTGAGGCTCAGTTATGAGGAAGGAA
TACAAATGTTGAAGGAAGCTGGAACAGAAGTTGAGCCTATGGGTGACCTCAACACTGAAG
CTGAGAGAAAACTTGGTCAGCTTGTTAGGGAGAAGTATGACACTGATTTTTTCATTCTCT
ATCGGTATCCTTTGGCGGCACGCCCCTTCTACACCATGCCTTGTTATGAAAACCCAGCTT
ACAGCAACTCTTTTGATGTCTTCCTTCGAGGCGAGGAAATAATTTCCGGAGCACAAAGAA
TACATGAACCCGAGCTGCTGGCCAAACGTGTGGCTGAGCATGGAATCGACAAGAATTCTA
TCAAGTCATACCTGGAATCATTTAGCTACGGCACACCTCCTCATGGCGGGTTTGGGATCG
GTTTGGAGAGGGTTGTGAAGCTGTTCTGCGGACTGGACGACATCCGAATGGCATCGCTTT
TCCCTCGTGACCCGCAGAGGCTGAGCCCATGATCTCTCTTCCTCTAAGAGTGAGCCTGAT
CCATGCTTGTCCTAGTTGTGATGACCTTCTGGATGCTTAATGACCTCTACCTTTCAAGCA
ATGTTCTGTTGTTGATGGTTACGAAACTGTCACTTTGCTGTGGGTATATTAGGCGAGTTC
GATAGCA

Homology of Contig U35_1506 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g46130.1	550	4e-166	protein\|tRNA synthetases class II domain containing protein, expressed
Brachypodium v1_2	Bradi4g07267.1	540	3e-168
Arabidopsis v10	AT4G31180.1	558	8e-145	Class II aminoacyl-tRNA and biotin synthetases superfamily protein \| chr4:15156696-15159362 FORWARD LENGTH=558