barSeed - Barley Seed Development Database

Probe CUST_36094_PI390587928

Source Contig U35_1507

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36094_PI390587928	Hv_44K_v2	TTGAAGCTGACGTACGAGGAAGGGATTAAAATGCTGAAGGAAGCCGGAACTGAAATTGAG	1292	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248364.1	1926	2e-24	1216 - 1275	100	60 / 60	plus	ABC04183 ABC44386
MLOC	MLOC_57322.3	1538	2e-24	118 - 177	100	60 / 60	minus	ABC04183
MLOC	MLOC_57322.2	2026	2e-24	560 - 619	100	60 / 60	minus	ABC04183
JLOC1	JLOC1_37131.1	1949	8e-25	1309 - 1368	100	60 / 60	plus
Harvest21	ABC04184	2013	3e-25	1272 - 1331	100	60 / 60	plus
Harvest35	U35_1507	2034	3e-25	1293 - 1352	100	60 / 60	plus

Contig Sequence (2034 bp)

>U35_1507 2034 Hv_44K_v2
ACACACCAACCTGAAGTTAAGCCCGGTCCATCGAGGGCGTCCGGTCGTCAAGGTCACCCC
GTCCACCACCATCCCACCAGACCACGCTAAACCCTATTCCTGTTTCCCCTCGCCGCCAGC
CCGCCACCGCCGCGATGTCGTCGGAGCCCGCGCCCGCCTCTGCCTCCACGGAGGAGCTCG
AGGCTGACCTGTCCGCCGCGACCATCAGCAAGAAGCAGCTAAAGAAGGACGCGCGGAAGG
CGGAGAAGGCCGGGAAGGCGTCGCAGCGCCAGCAGCAGCAGCAGCCGCAGGCGGAGGAGG
CCGACCCCTTCGCGGCCAACTACGGCGATGTCCCCGTCGAGGAGATCCAGTCCAAGGTCA
TCTCCGGCAGGACCTGGACCGACATCGGCGACCTCGACGAGGCCGCCGCGGGCCGCTCCG
TGCTCATCCGCGGCTCCGCGCAGACGCTGCGCCCCGTCAGCAAGAAGATGGCCTTCGTCG
TCCTGCGCCAGAGCATGAGCACCGTGCAGTGCGTCCTCGTCGCCAGCCCCGACGCCGGCG
TCAGCACGCAGATGGTGCGCTTCGCCACCTCCCTCAGCAAGGAGAGCATCGTCGATGTCG
AGGGCATCGTCACCCTCCCCAAGGAGCCCCTCAAGGCCACAACACAGCAGGTTGAGATCC
AGGTTAGGAAGGTCTACTGCATCAATAGGGCGATCCCCACACTTCCGATCAACCTTGAGG
ATGCGGCCCGTAGTGAAGCAGAATTCGACAAGGCTGAACAAAATGGAGAGAAGCTGGTAC
GAGTTCTTCAGGACACACGCTTGAACTATCGAGCTATCGATCTAAGGACACCTGCGAATC
AAGCAATCTTCCGCATCCAATGCCATGTTGAGAACAAATTCAGAGAATTTTTGTTCTCGG
AGAACTTTATCGGGATCCACAGTCCAAAGTTGATTGGTGGATCAAGTGAAGGTGGTGCAT
CTGTATTCAAGCTGGAGTACAATGGCCAGCCTGCTTGTTTAGCACAATCTCCCCAATTAT
ACAAGCAGATGAGCATCTGTGGTGGCTTTGGCCGCGTGTTTGAGGTTGGTCCTGTATTTA
GAGCAGAAAAGTCAAACACTCACAGGCATCTGTGTGAGTTTATTGGGTTGGATGCTGAGA
TGGAGATCAAGGAGCACTACTTTGAGGTTTGTGATATCATAGATGGCTTATTTGTAGCAA
TATTCAAACACTTGAATGAAAATTGTCAGAAGGAACTTGAGACAATAAATAGGCAGTATC
CATTTGAACCTCTGAAGTACCTAGAGAAAACCTTGAAGCTGACGTACGAGGAAGGGATTA
AAATGCTGAAGGAAGCCGGAACTGAAATTGAGCCTATGGGTGACCTTAACACTGAAGCTG
AGAAGAAACTTGGTCGGCTTGTTAAGGAGAAGTATGGCACAGAATTTTTCATCCTCTATC
GATATCCTTTGGCTGTGCGCCCTTTCTACACCATGCCTTGCTACGATGATCCAGCTTACA
GCAACTCTTTTGATGTCTTCATTCGAGGTGAGGAAATTATTTCTGGAGCGCAAAGAATAC
ATACGCCTGAACTTCTGAGGAAACGTGCAATCGAGTGTGGAATTGATGCGAGTACTATTG
CATCGTACATTGAATCATTCAGCTACGGTGCACCTCCTCATGGCGGTTTCGGGGTCGGGT
TGGAGAGAGTGGTTATGCTGTTCTGCGCCCTCAACAACATCAGGAAGACATCGCTTTTCC
CTCGCGACCCACAGAGGCTCGCGCCATAAGTTTCCTTTCTGCGTCGACAGCTTGCACCAT
GGTTGTCATCATCTTCACCAATCTGCTAGTCAAGTACTGAAACAACCTACGATGATGGGT
GCAGCGATGATGGGTGCAGCGTGGTTCATTACGTTTGAGTTAATGGCGTGGCCAATGTGT
AGCACCGTCAGTGTGTGTTGGAGCTTCTGTTAATACTCACAAAGCTGCTTATGTTGATAA
CCAATCTCGAACAAAATGAAAATTAATCTGCTTTTCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_1507 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g46130.1	550	protein\|tRNA synthetases class II domain containing protein, expressed
Brachypodium v1_2	Bradi4g43390.1	559
Arabidopsis v10	AT4G31180.1	558	Class II aminoacyl-tRNA and biotin synthetases superfamily protein \| chr4:15156696-15159362 FORWARD LENGTH=558