barSeed - Barley Seed Development Database

Probe CUST_36075_PI390587928

Source Contig U35_1527

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36075_PI390587928	Hv_44K_v2	GTACCATCTTGGCTAACTAGTAGTAGTCTATTTTTTGCATCTTAATAGCCTTCCAACTTT	629	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58279.2	3860	2e-24	1598 - 1657	100	60 / 60	minus	ABC00270 ABC00658
JLOC1	JLOC1_37851.2	3928	8e-25	2195 - 2254	100	60 / 60	plus
Harvest35	U35_1527	849	3e-25	630 - 689	100	60 / 60	plus

Contig Sequence (849 bp)

>U35_1527 849 Hv_44K_v2
CAGCATTATCTATACATGGTGATAAAGCTCAGTCTGAAAGGGACTATGTTCTGGCAGAGT
TTAAGAATGGGAAGAGTCCTATAATGGCTGCCACAGATGTAGCGGCACGTGGTCTTGGTA
TGGTGACTTGTTTGAATATTAGGATTATGTTATAGTTCCAAGTGCTCAGGGATGATAAGT
CGGAGGGCTGTTCAGCTGCTTTTGGTTGAGTGAACTGAACTTGTGGGTTGGTGGTGTATG
CGAGGTGCTATCAAGTCAGAGGTAGATCATCTTTTCCCTCCGTTTGCCTCACTTGAGCGT
AAGCAATTGGCAGTGTTACCAGGGACTTCAGTTTCCGTCTATCATGGTGACCAAGTTGTC
TACGGTTTAGAGACCTGTTAGACCTGTGGGCTTTGCATTTGAGGGAGATCCTTAACTTAG
TTTTAAATAGGGCAATATCCTACTGTCTCGAGTATTTTGCTTCTGTTAGTTGATTTTTTT
AGCATCTTCACTTCAGCATCTACTATTATTTAATATGCATCTTAATCGGTTTCTAACTAT
TCCTGGAAGACATCTTCCTGTAAGCATTGCTATAAATATTTTTTGCTGTCTTTTACGGTA
AGTGCCATCCTTTACATATCTTACAAACTGTACCATCTTGGCTAACTAGTAGTAGTCTAT
TTTTTGCATCTTAATAGCCTTCCAACTTTCATTTCATTGATCTCTTGATATAATGTTGGT
AATAATTCAGAATGAGCATATACCAACATGCCAAGTTATTATGATTAGGGCACTCTCAAC
GCATCATATCTTAAGTTCAATCATGTACATTAAATTATGTGTTTAGATACAACTTCTCTA
ATGGCTTAT

Homology of Contig U35_1527 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None