barSeed - Barley Seed Development Database

Probe CUST_36074_PI390587928

Source Contig U35_1528

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36074_PI390587928	Hv_44K_v2	ACATTAGTCGTCCCTGTGTTTGCTTCTGTATCTCTCTGTATCTGAAGGGCTCTCCCATAT	1801	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.681	1.429	1.218	0.846	0.366	0.297
Raw	344.799	464.817	341.839	370.658	57.744	50.417

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_37851.3	2418	8e-25	2293 - 2352	100	60 / 60	plus
JLOC1	JLOC1_37851.2	3928	8e-25	3803 - 3862	100	60 / 60	plus
JLOC1	JLOC1_37851.1	2549	8e-25	2424 - 2483	100	60 / 60	plus
Harvest21	ABC00270	1788	3e-25	44 - 103	100	60 / 60	minus	ABC00270
Harvest35	U35_1528	1904	3e-25	1802 - 1861	100	60 / 60	plus

Contig Sequence (1904 bp)

>U35_1528 1904 Hv_44K_v2
GGGTAGGGGCAGAGGCGGCGGTGGCGGTGGACCAGGCGGCTTCCGTGGCGGCGGTGGGAG
AGGTGGCAGCAACGGGAGGGACGGGCTCGACTCGCTCTCCCTGCCCAAGCCGGACTTTCG
GGGCCTTATACCGTTCGAGAAGAGCTTCTACGTGGAATGCCCCGCCGTGCAGGCCATGTC
GGAGACGGAGGTGGCGCAGTACCGTCAGCTCCGGGATATCACCGTGGAGGGCCGGGAGGT
GCCCAAGCCTATCCGCTTCTTTCACGAAGCCAACTTTCCAGATTACTGCATGCAAGCGAT
CGCCAAGTCCGGATTTGTGGAACCAACGCCTATCCAAGCTCAGGGTTGGCCGATGGCTTT
GAAGGGCAGGGACGTGATTGGTATTGCAGAAACTGGATCTGGGAAAACACTATCTTACAT
TCTACCTGGTTTGGTTCATGTTGGTGCACAACCTCGACTCGAACAAGGTGATGGCCCAAT
TGTCTTGATCCTTGCTCCAACAAGAGAACTGGCTGTTCAAATACAGGCAGAAGCTACAAA
GTTTGGATCATACTCGAGAACTAGAAGCACATGTATCTACGGTGGAGCACCTAAGGGACC
ACAAATACGTGACCTCAGGAGAGGAGTTGAAATCGTCATTGCAACACCAGGTCGGTTGAT
TGATATGCTGGAAGCTGGTCACACAAACCTACGTCGGGTTACATACCTTGTGCTGGATGA
GGCAGACCGTATGCTTGATATGGGTTTTGAACCTCAGATTCGGAAAATATTAGCACAAAT
CCGTCCAGACAGGCAAACCTTGTACTGGAGCGCTACATGGCCGAGAGAAGTTGAAACGTT
GGCTAGACAATTTCTGCAGAACCCTTACAAGGTAATGATAGGAACAGCTGAACTTAAAGC
TAACCATTCCATACAACAAATTGTTGAAGTTATCTCGGATCATGAAAAGTATCCCAGGCT
AAGTAAGCTTCTATCTGATTTGATGGACGGGAGCCGAATCTTAATATTTTTTCAAACAAA
AAAGGAATGTGACAAGGTCACTCGGCAACTTAGAATGGACGGATGGCCAGCATTATCTAT
ACATGGTGATAAAGCTCAGTCTGAAAGGGACTATGTTCTGGCAGAGTTTAAGAATGGGAA
GAGTCCTATAATGGCTGCCACAGATGTAGCGGCACGTGGTCTTGATGTGAAGGATATTAA
GTGCGTGATTAATTTTGATTTCCCGACAACTATCGAAGATTATATTCACAGGATAGGTCG
AACTGGCCGTGCTGGTGCTACTGGAATGGCCTTCACGTTCTTCACCCATTCCAATTCAAA
ATATTCAAGGAATCTCGTTAAGATCTTGCGTGAAGCTGGACAGGTTGTGAATCCAGCGCT
AGAAGCTATGTCCAAGTCAGCTGGTTCCATGGGAGGAGGAAGTAATTTCCGGTCAAGGGG
CCGAGGTGGGTTTGGTGGTGGTGGGTATGGTGGTAACCGTTCTGGATCGAATTCCATTCC
AGTACGTAGAAGATACTAAGAAAGAAGATCCATTCTCATGCTGGAGAAGACAGAAAGATG
AAGTTTTATCTGCATACATTTAGGCATTAAATTAAATACATTTTTTGGGGGAATTTCTTT
GAAATCCTGCAACTGGTAGAAGATCGAAACAAAGTTCTTAATATTTTTGTACTGGGGCTC
ATATGAAAAGGAACTCATGTATCAGCGACTATAGATTACGATAGTCCAATCGAAACAGTG
AACTAAGCATGTATTTTGTGTCTAATTGTCGGAGAAAAAAAAAAAAAATTGTGTTGCTTC
TACATTAGTCGTCCCTGTGTTTGCTTCTGTATCTCTCTGTATCTGAAGGGCTCTCCCATA
TCCAACCGAAGTCGAGGTTCNNANNANAAAAAAAAAAAAAAAAA

Homology of Contig U35_1528 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g68320.2	667	protein\|DEAD-box ATP-dependent RNA helicase 30, putative, expressed
Brachypodium v1_2	Bradi2g58360.1	572
Arabidopsis v10	AT5G63120.2	591	P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr5:25318967-25322071 REVERSE LENGTH=591