barSeed - Barley Seed Development Database

Probe CUST_36073_PI390587928

Source Contig U35_1529

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36073_PI390587928	Hv_44K_v2	GTCCGCACTGGTATTCAGGAATCAGGGCGACGCTTTTATCTTGTTTTATACTGATGATGG	1214	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.641	1.232	1.026	0.957	0.182	0.316
Raw	137.027	163.555	118.642	187.098	11.767	22.233

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58279.2	3860	2e-24	677 - 736	100	60 / 60	minus	ABC00270 ABC00658
JLOC1	JLOC1_37851.2	3928	8e-25	3116 - 3175	100	60 / 60	plus
Harvest21	ABC00270	1788	3e-25	731 - 790	100	60 / 60	minus	ABC00270
Harvest35	U35_1529	1889	3e-25	1215 - 1274	100	60 / 60	plus

Contig Sequence (1889 bp)

>U35_1529 1889 Hv_44K_v2
GGGGACGTGATTGGTATTGCAGAAACTGGATCTGGGAAAACACTATCTTACATACTACCT
GGTTTGGTTCATGTTGGTGCACAACCTCGACTCGAACAAGGTGATGGCCCAATTGTCTTG
ATCCTTGCTCCAACAAGAGAACTGGCTGTTCAAATACAGGCAGAAGCTACAAAGTTTGGA
TCATACTCGAGAACTAGAAGCACATGTATCTACGGTGGAGCACCTAAGGGACTATGTTCT
GGCAGAGTTTAAGAATGGGAAGAGTCCTATAATGGCTGCCACAGATGTAGCGGCACGTGG
TCTTGGTATGGTGACTTGTTTGAATATTAGGATTATGTTATAGTTCCAACTTTCATTTCA
TTGATCTCTTGATATAATGTTGGTAATAATTCAGAATGCGCCTATACCAACATGCCAAGT
TATTATGATTAGGGCACTCTCAATGCATCATATCTTAAGTTCAATCATGTACATTAAATT
ATGTGTTTAGATACAACTTCTCTAATGGCTTATATCTTAGTGTTGTATCTAGAAGTGCTC
TCATTTAATATGTTTTGTTAGAGAAAAGTGTTAGTTGGTGTAGTTTCGGTGCTACGAGCT
ATATGTAGATTAAGATTGGTTAAATTTCTCTTTCCGCATGAAAAGTGCCAAATCAGTTTT
TTGGCTACACACCATGGAGCACTGTGACTGCCCTTATTGGAGTGAAGCAATAAAAGTGCT
CACACAGTATGACTTGCATAGGTAATCAGGATAATTTGTTCATTCTTATAGAACTGTAAG
GATCTCCCTGCCCCCCTCCCCCTCAGACTTATTGTCTGCTTATTATAAGTGCCTTGACTG
TCGGTATCACTGCCAATTGGTCTAAAGATGGTTTGTAGTATTGTCATTGAAATCCTCAAG
TTGACCTCTGATGAAGCACCTAAGCATTGCGGCCTGTGTTGGATTGTTGTGGGTGACAGA
TTTGTTCTGGTTCACACGGATATATGGTGTTGGTACATTATTGTATAAAAGTCACGCTCT
GTAAAAAAGGCGGAGAGTTTAAGCACCATCAATTCCACATCCAGCAGTGATTGATACCCA
GTTCAGTTCTGCAGCCCCTTCGACTTGTGTTAGTTGTAGATGTTGAGAGTGAAGCCTTGT
GCAGTGTTCTTTGGATCTTGTCTAAGCCATGTGCTACCTTTCTGTGGAGATCGACAATGT
TGATGCCCAGTGTGGTCCGCACTGGTATTCAGGAATCAGGGCGACGCTTTTATCTTGTTT
TATACTGATGATGGTCTTGTTGATTTTGCAGATGTGAAGGATATTAAGTGCGTGATTAAT
TTTGATTTCCCGACAACTATCGAAGATTATATTCACAGGATAGGTCGAACTGGCCGTGCT
GGTGCTACTGGAATGGCCTTCACGTTCTTCACCCATTCCAATTCAAAATATTCAAGGAAT
CTCGTTAAGATCTTGCGTGAAGCTGGACAGGTTGTGAATCCAGCGCTAGAAGCTATGTCC
AAGTCAGCTGGTTCCATGGGAGGAGGAAGTAATTTCCGGTCAAGGGGCCGAGGTGGGTTT
GGTGGTGGTGGGTATGGTGGTAACCGTTCTGGATCGAATTCCATTCCAGTACGTAGAAGA
TACTAAGAAAGAAGATCCATTCTCATGCTGGAGAAGACAGGAAGATGAAGTTTTATCTGC
ATACATTTAGGCATTAAATTAAATACATTTTTTGGGGGAATTTCTTTGAAATCCTGCAAC
TGGTAGAAGATCGAAACAAAGTTCTTAATATTTTTGTACTGGGGCTCATATGAAAAGGAA
CTCATGTATCAGCGACTATAGATTACGATAGTCCAATCGAAACAGTGAACTAAGCATGTA
TAAAAAAAAAAAAAAGGAGATGCCCTTTG

Homology of Contig U35_1529 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None