barSeed - Barley Seed Development Database

Probe CUST_3605_PI390587928

Source Contig U35_28113

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3605_PI390587928	Hv_44K_v2	GCTCTAGTCCACAAGTGACATGTATATTGTTGGAATGTTGGATCATTTTCTTCTCTTTAA	432	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358760	993	2e-23	933 - 990	100	58 / 58	plus	ABC09381 ABC24544
MLOC	MLOC_66940.1	1954	2e-23	57 - 114	100	58 / 58	minus	ABC09381 ABC24544
JLOC1	JLOC1_44163.2	703	1e-23	605 - 662	100	58 / 58	plus
JLOC1	JLOC1_44163.1	658	1e-23	560 - 617	100	58 / 58	plus
JLOC1	JLOC1_44164.1	2032	1e-23	134 - 191	100	58 / 58	minus
Harvest21	ABC24544	515	3e-25	441 - 500	100	60 / 60	plus	ABC24544
Harvest35	U35_28113	507	3e-25	433 - 492	100	60 / 60	plus

Contig Sequence (507 bp)

>U35_28113 507 Hv_44K_v2
GCTTCGGCGTCGGTTTCGACCTCACGTGTCGCCGGAGACGTTCGGCCACTACTGCGCCAT
CCTCCAGTCCGAGATGCTCTGCCTGGAGCTGGAGCCGGAGCCCCTTCTCCCCCCTACCAC
CGCCTACGCTCCAGGCAGCAGGATGCATTGCTGCGTCTCTGAAGACGATGGCACTAGCGC
CACCGCTACCAGCAACAGCAGTACTCAGCAGCAGCTGGCTGCATAGGTCGTTAGAGGCAT
ATGTATACAGGACACTGTGTGAGTGCGTACATGTACATGGTCATGTTGCTCGGGCGAGCA
GAGTACGCGAGCTTCCTCGTTGTGATGTGCTGCTGTTTGGTTCCTTTGGTGTATAGCTTG
TTTAGGTGACAGAGGTGGACACTGCAAGAGTGCAGACCGACTTGAGCAAGTTGAATACAA
GGTGTGTGGTGTGCTCTAGTCCACAAGTGACATGTATATTGTTGGAATGTTGGATCATTT
TCTTCTCTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_28113 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None