barSeed - Barley Seed Development Database

Probe CUST_3604_PI390587928

Source Contig U35_298

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3604_PI390587928	Hv_44K_v2	GTGTAACCCCGACCTATACTAGTTCAAACATGGGAATAAAAGATAAATACAGTTCTTGTC	1168	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_21855.1	983	2e-24	527 - 586	100	60 / 60	minus	ABC00245 ABC49398 ABC53003
JLOC1	JLOC1_15149.1	560	8e-25	104 - 163	100	60 / 60	minus
Harvest21	ABC00245	1184	3e-25	1108 - 1167	100	60 / 60	plus	ABC00245
Harvest21	ABC00749	1250	1e-23	1169 - 1225	100	57 / 57	plus
Harvest35	U35_298	1250	3e-25	1169 - 1228	100	60 / 60	plus

Contig Sequence (1250 bp)

>U35_298 1250 Hv_44K_v2
CCTTTTCCACAACCCCAACAACCATTTCCACAGCCCCATCAACCATTTCCCTCGCAACCA
CAACAACCATTTCCCCAAACCGAAGAAGCATTCCCTCTACAGCCACAACAACCATTCCCC
CAGCAACCAGAACAAATAATTCTCCAGCAACCCCAACAACCATTCCCTCTTCAACCAGAA
CAAATAATTCCCCAACAACCCCGACAACCATTTCCCCTGCAACCGCAACAACCATTCCCC
CAGCAATCCCAACAACAATTCCCCCAACAACCCCAAGAAACATTACCCCAGCAACCAGAA
CAAATAATTCCACTGCAACCACAACAACCGTTCCCGCAGCAACCACAACAACCATTTTTC
CAGCCTCAACAACCATCCCCCCAGCAACTAGAACAAATAATTCCCCTGCAACCGCAACAA
CCATTCTTCAAGCCCCAACAACTAACCCCCCTACAACCACAACAACCATTCCCACAACAA
CCCCCACAACCTTTTCCCCAGCCACAACAACCATTCCCCTGGCAACTAGAACAACCATTC
TCCTGGGAACCACAACAACCATTTTCTCAACCCCAACAACCAGTTCCCCAGGACCCGCAA
CAACCATTCCCTCTACAGCCGCAACAACCATTCCCCCAACAACCACATCAATCATTTCTC
CAGCCTCAACAGCCAATTCCCCAGCAACCCCAACAACCATTCCCTCTACAGTCACAACAA
CCATTCCCCCAGCAACCACAACAACCATTTCGCCAGCCTCAACAACCATCCCCCCAACAA
CCACAACAACCATTCCCCCTACAACCGCAACAACCATTCCCCCATCAAACCCAACAATCA
TTTCTCCAGCCCCAACCCCAACAACCATCCACCCTGCAACCGCAACAACCATTACCCCAA
CAACCCCAACAACCATTTCTCCAGCCCCAACGACCATTAACCCATCAACCAGAACAAATA
ATTTTCCAGGAAACCCAACAAACTTTCCCCCAACAACCACACCAACCTCAGCAACCCTAT
CCACAACAACAACCATCCGAGAGTAGTGTTACAAGCATCGGTGGCCAATGAAATGAAGAC
CTGTAAAACAAAAGACGGGCGGATCATCGTTGTTTAGTCAATGAGCGTTCAATGTACCGA
TGATAAATAAAGTGATGTGCACCATCATGTGTAACCCCGACCTATACTAGTTCAAACATG
GGAATAAAAGATAAATACAGTTCTTGTCAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_298 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None