barSeed - Barley Seed Development Database

Probe CUST_36042_PI390587928

Source Contig U35_1560

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36042_PI390587928	Hv_44K_v2	TGCCCACTGTTGTGCTACTATAATTCAGTCGCGTGGTTGCATCAGTTTGCTTGGACTAAA	672	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67112.1	770	2e-23	657 - 714	100	58 / 58	plus	ABC04289
MLOC	MLOC_67111.7	3871	2e-23	3131 - 3188	100	58 / 58	minus	ABC04289 ABC04548 ABC43241
MLOC	MLOC_67111.4	4497	2e-23	1695 - 1752	100	58 / 58	minus	ABC04289
JLOC1	JLOC1_44270.1	3398	1e-23	735 - 792	100	58 / 58	plus
JLOC1	JLOC1_44269.6	2125	1e-23	1884 - 1941	100	58 / 58	minus
JLOC1	JLOC1_44269.5	2192	1e-23	1951 - 2008	100	58 / 58	minus
JLOC1	JLOC1_44269.4	2234	1e-23	1993 - 2050	100	58 / 58	minus
JLOC1	JLOC1_44269.3	1936	1e-23	1695 - 1752	100	58 / 58	minus
JLOC1	JLOC1_44269.2	2176	1e-23	1935 - 1992	100	58 / 58	minus
JLOC1	JLOC1_44269.1	1875	1e-23	1634 - 1691	100	58 / 58	minus
Harvest21	ABC04289	769	3e-25	673 - 732	100	60 / 60	plus	ABC04289
Harvest35	U35_1560	805	3e-25	673 - 732	100	60 / 60	plus

Contig Sequence (805 bp)

>U35_1560 805 Hv_44K_v2
CGCATCGCTACTCCCTTAACTTCTTCCCCTTTCGACCTTGTAGGCGAACACCAACCCGAA
TCCCCACCCCGAAGGCTTCCTCCCGCGGCGAAACCCTAGCTAGCGACCGGAGCGCTCGGC
GGCGGGAGCCATGGCGGACGACGATTACAATGAAGTTGACATGGGGTATGAGGATGAGCC
TCCAGAAGCTGATATTGAGGAAGGGGTTGAAGAAGATCCTGAGAACAATGAGGATGCCCC
TGATGATGTGGTAGGGGGTGAAGGTGAAGAAAAGGAACAGGAAAAGACTGCCCGTCCACG
CAATACAACAAAATATATGACCAAATATGAGCGGGCACGCATCCTTGGCACACGTGCTTT
GCAGATAAGCATGAATGCTCCAGTTATGGTTGAGCTTGAGGGTGAAACTGATCCTCTTGA
GATTGCCATGAAAGAACTGAGAGCACGCAAGATCCCCTTCACGATTAGGCGGTACTTACC
TGATGGAAGCTATGAGGACTGGGGAGTCGACGAGCTCATTGTGGAGGACTCGTGGAAGCG
TCAAGTTGGCGGGGAGTAGAGCTGGCAGACTGTTGCTGCAACTAAACCTTGCCCTAGTAG
CTATAATATGCAATGTTTAGCACTGAATTGCTGTGACAATGTTATGTTACTGTAACATGT
GTGGACTATGGCTGCCCACTGTTGTGCTACTATAATTCAGTCGCGTGGTTGCATCAGTTT
GCTTGGACTAAAAAAAAAAAAAAAAACAAGTTGTGAGTGATACCCAATCTACCTCTTTGT
GTGCGTGGAAAAAAAAAAAAAAAAA

Homology of Contig U35_1560 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g38960.1	143	6e-62	protein\|DNA-directed RNA polymerase subunit, putative, expressed
Brachypodium v1_2	Bradi3g45960.2	143	4e-64
Arabidopsis v10	AT2G04630.1	144	1e-54	\| Symbols: NRPB6B, NRPE6B \| RNA polymerase Rpb6 \| chr2:1619168-1620246 REVERSE LENGTH=144