barSeed - Barley Seed Development Database

Probe CUST_36015_PI390587928

Source Contig U35_17134

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36015_PI390587928	Hv_44K_v2	GAGGATCTTGGACAGCAAGACAGTGTCTAAATATGAAATTTGACCATTGTTGTGTTCTTT	1578	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252530.1	1418	2e-24	1268 - 1327	100	60 / 60	plus	ABC07624 ABC07625
JLOC1	JLOC1_48289.2	1304	8e-25	1091 - 1150	100	60 / 60	plus
JLOC1	JLOC1_48289.1	1341	8e-25	1128 - 1187	100	60 / 60	plus
Harvest21	ABC07625	739	3e-25	105 - 164	100	60 / 60	minus	ABC07625
Harvest35	U35_17134	1742	3e-25	1579 - 1638	100	60 / 60	plus

Contig Sequence (1742 bp)

>U35_17134 1742 Hv_44K_v2
ACGGAAGCCGCAAGGGCCAAAGAGCCTTATCTCTGTCTCGCGCGCGCTCGTACCGCCATG
TCGCCGTCGTCAGCGGCCCGCGCCCTCTCGCCGGCGCCGCCCCCGCCCCAGCGTAAGATC
CGCCTGCGGCCAGCGAGGTGCGCGGGGTTCGTGGGCCCGGCGGTGGAGACGGCGACCCCG
GGGCCAAGGGCGGCGACCCTCGCCAGCAGCCGCGGCGGGACCGAGTCGTCGCTGGCCATC
TGCCGGGTGCTCAACGGCATGTGGCAGACCAGCGGCGGGTGGGGCCGCATCGACCGCGCC
GACGCCGTCGACGCCATGCTCGCCTACGCCGACGCCGGCCTCTCCACCTTCGACATGGCC
GACCACTATGGACCGGCGGAGGATTTATACGGCATGTTCATCAACAAAGTCCGGCGCGAG
CGCCCGCCCGAGATGCTGGAACAAGTCAGGGGGCTTACGAAGTGGGTGCCGCCGCCGGTT
AAGATGACAAGAAGCTACGTTGAGGAGAACATCAACAGGTCCCGGAAGAGGATGGACGTC
GCTGCCCTGGACATGCTGCAGTTCCATTGGTGGGACTACGCAAATCCCGGATATCTAGAT
GCACTAAAGCACATCACAGACCTGAAGGAGGAAGGCAAGATAAAGACTGTAGCTCTGACG
AACTTCGACACAGAGAGGCTGCAAATAATCCTAGAAAATGGAATACCTATTGTCAGCAAC
CAGGTTCAACATTCTATTGTGGATATGCGCCCGCAGAAAAAGATGGCAGAGCTTTGCGAG
CTTACCGGAGTCAAGCTTATCACGTACGGCACGGTGATGGGTGGCCTATTGTCTGAGAAG
TTCCTCGACACCAACATCAACATACCTTTCGCTGCACCTCCTCTGAACACCCCATCCCTG
CAGAAGTACAAGAGAATGATCGATGCTTGGGGTGGCTGGAGCCTGTTCCAGGCTCTGCTC
CAGACCTTGAAGAAGGTGTCGCTGAAACACGGCGTCCCAATCTCGACCGTCGCCGTAAGA
TACATACTGAACCAGACATCGGTGGCGGGCTCGATGGTGGGCGTGAGGCTGGGGCTGTCG
GAGCACATCAGGGACACCAACGCGATCCTGTCGCTGCTGCTGGACGAGGAGGACATGGGC
AGCATCGCCGAGGCGTCGCAGCGGGGCCGGAACCTGATGGAGGTCATCGGGGACTGCGGC
GACGAGTACAGAGCCTAGTGCTGATTTTAACATGGCCGCATGTGCTCCCACGACGATGTA
TACATACCACCTTAACAAATGAAATGAGATTAGAGTGGCAATCATGGAGAGAAAAATTGG
TTTGCAGAGGCATGGAGACAGATGGACAGAGAGGCATGGAGACAAGGAGGATCATGTGCT
CCACCGAAAGGAGGATCATGGTGGTGGACAGATCTCCCTGGCCAACAGGGAGCATATCCC
GGCATTGGAGACCGATCTGATTATGGCATGATAATATATTTTAATTGCAGCAAGTATAAA
ATTCATGGAATCATCGTGTTGATGGTGATGCTTTGCCGTGCACATTGTTATTAGTTGCTC
CTCTGTTTGGGAATATATGAGGATCTTGGACAGCAAGACAGTGTCTAAATATGAAATTTG
ACCATTGTTGTGTTCTTTGTTAAAAGTACATTTAAAGTTGTGTACAATCAAAAATGTGTT
TTCAAGGTACCTGTAATGAATAAGAAAATAAAAACTGTTTTACCGATATTTTTTCGGGCG
GT

Homology of Contig U35_17134 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os09g39390.1	386	protein\|oxidoreductase, aldo/keto reductase family protein, putative, expressed
Brachypodium v1_2	Bradi4g38440.1	385
Arabidopsis v10	AT2G27680.1	384	NAD(P)-linked oxidoreductase superfamily protein \| chr2:11803981-11805965 REVERSE LENGTH=384