barSeed - Barley Seed Development Database

Probe CUST_36013_PI390587928

Source Contig U35_17135

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36013_PI390587928	Hv_44K_v2	GCACCGTGTTCCATTCTACATCATGTTCTTATTGTATAGGTGAAAATTTCTATGTTATGC	2348	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373933	1999	2e-24	1887 - 1946	100	60 / 60	minus	ABC00615 ABC06843
MLOC	AK375989	2978	2e-24	2893 - 2952	100	60 / 60	plus	ABC06842 ABC06843
MLOC	MLOC_59102.2	4013	2e-24	2403 - 2462	100	60 / 60	plus	ABC00615 ABC06842 ABC06843
MLOC	MLOC_59102.1	3887	2e-24	2314 - 2373	100	60 / 60	plus	ABC00615 ABC06842 ABC06843
JLOC1	JLOC1_38438.1	3903	8e-25	2314 - 2373	100	60 / 60	plus
Harvest21	ABC06843	1820	3e-25	1709 - 1768	100	60 / 60	plus	ABC06843
Harvest35	U35_17135	2460	3e-25	2349 - 2408	100	60 / 60	plus

Contig Sequence (2460 bp)

>U35_17135 2460 Hv_44K_v2
CTCCTGCACCGGCTCGGGCGTCACCGAAATCAAGCTCGCTGGGACAGGGCTGAATGGCTC
TCTGGGCTACGAGCTCTCCAATCTGTTCTCACTCAAAACATTGGATTTGAGCAACAACCA
TATTCAAGGTTCAATTCCTTACCAGCTGCCACCAAACCTCACATATCTGTATGTATCCTG
CCCTGGTATAATCTGTTGCTGCATTTGTTTGCGTCGGTGGTTTCACCCTGAATGGCCGTA
CAGGAATCTGGCGACCAACAATTTCTCTGGCAATCTCCCATACTCCATATCCAACATGGC
TTCAATTGAGTACCTCAATCTCAGCCACAACGCACTGGCTCAACAAATAGGCGATTTGTT
TGGAAACCTCACTTCACTTTCAGAGTTGGACGTGTCTTTCAACAAACTGACAGGGGATCT
TCCAACTTCTATTGGCTCTCTATCAAATATTTCTAGTCTCTATATGCAAAACAATCAGTT
AACAGGTTCTGTCAATGTTCTAAGTGGTCTAGGCCTTACTACCCTAAACATTGCAAACAA
CAATTTCAGTGGCTGGATACCGAAAGAGTTCAGCTCAATCCCAGATGTGATACTTAGTGG
AAACTCATTCCTGAATGGACCTGCTCCTCCACCACCACCTTTCATGCCACCACCCCCTAG
AAGGCCGCGCAATCGTCCTAACCGTTCTGGGGGAAGTGGAAATGCTCCAAAAGGCTCTGA
GAGCTCCACTGGTCAAGGTGGAAACAATGGTCTGCAGACAGCTTCCCTTGTGGGGATAAT
TGTTGGCTCAGTACTTGCTGCTTTGTGTGTGCTTCTTCTTTTGGTATTATGCATTCGCAA
ATCTCGGAAAAGGAAGGATGATAGCAGCACGGGATCCAAAGATTTTGTAGGTCCACTATC
AGTGAACATAGAGGAAGCATCTAACAGAGAAATCCCAGAACAAGGTCTTGAAAATACGGC
TATGAAAGTCCTGCCTGCTGAGAAAATGACTCCCGAGAGGGTTTATGGTAAAACTGGTTC
TATGAGAAAGACAAAGGTTCCCATAACTGCGACACCTTACACCGTGGCTTCCCTCCAAGT
AGCGACGAATAGCTTCTGTCAAGATTCCCTTCTGGGTGAGGGTTCACTTGGTCGTGTTTA
CAAGGCCGATTTCCCCAATGGAAAGGTTATGGCTGTTAAGAAGGTAGACAGTGCCGCTAT
TTCCTTGCAGGAAGAAGATGATTTCCTTGAGGTTGTATCAAGTATGTCACGACTTAGGCA
TCCAAACATCGTGCCACTTACAGGGTACTGTGTGGAGCATGCACAAAGGCTTCTCGTTTA
TGAGTACATTGGAAATGCAACGCTGCATGATATGCTGCACTTCTCTGATGAGATGGGCAG
AAGACTTACATGGAACATCCGTGTAAGAATAGCACTTGGCACCGCTCGGGCATTAGAATA
CCTGCATGAGGTGTGCTTGCCCTCTGTTGTTCATAGAAATTTTAAGTCCGCAAACATCCT
ACTTGATGAAGAGCATAACGCACATTTATCTGACTGTGGTCTCGCTGCCTTGACACCCAA
TACCGAGAGACAGGTTTCGACTGAAGTGGTTGGCTCATTTGGATACAGTGCCCCAGAGTT
TTCCATGTCAGGAATTTATACTGTAAAGAGTGACGTGTACAGTTTTGGAGTAGTGATGCT
AGAGCTATTGACCGGAAGGAAGCCACTAGACAGTTCTAGAGAGCGGTCAGAACAGTCTCT
TGTTAGATGGGCTACGCCTCAGCTTCATGATATCGATGCACTTTCTAAGATGGTTGATCC
AGCACTAAATGGAATGTATCCTGCAAAATCGCTCTCCCGCTTTGCAGACATAATTGCACT
CTGTGTTCAGCCGGAGCCAGAGTTCCGTCCTCCTATGTCTGAGGTTGTCCAGCAACTTGT
GCGCCTGATGCAGAGGGCTAGCATAGTAAGGCGGCAATCAGGTGAGGAACTAGGGTTTTC
TTACAGAGCTCCAGAACGTGAAGGAGATGCGAGAGACATTTCCTTCTGAGCACTTTCTAC
AATGGCAAAAGTGAAAAGGTGGTCTGAGGGTCAAATACAAGAATTGAGTGACTGCATATG
AACTGGATACATGAGTTGTTCAGACGGCGGTTGAGGATCAAACGAATTTGAGGAGATAAT
TTTGGTATTTACATTGTCCAATTATGCTCATTCTTCTCACTTTTTTTGTCCGGGGAAGTC
TACTTCACAGTTAAACTGTGTTCTCAAATCAACGGTGTGTACAGCATGTTAGTCGGGGTA
GAGAAAAGAAATGTTAATGCAACAGGATAACTTTGTTGGATGTCAAACAAGTACATACCT
TTTACTTGGCACCGTGTTCCATTCTACATCATGTTCTTATTGTATAGGTGAAAATTTCTA
TGTTATGCAAATTCTTTTTTAAGTAATTTACGGGAAAACTTTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_17135 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g09740.1	719	protein\|STRUBBELIG-RECEPTOR FAMILY 7 precursor, putative, expressed
Brachypodium v1_2	Bradi3g06590.1	716
Arabidopsis v10	AT4G22130.1	703	\| Symbols: SRF8 \| STRUBBELIG-receptor family 8 \| chr4:11723733-11727331 FORWARD LENGTH=703