barSeed - Barley Seed Development Database

Probe CUST_36011_PI390587928

Source Contig U35_17136

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36011_PI390587928	Hv_44K_v2	CGAATATGCTGGGGATTTTGTCAATGGCTTGTATAGATATAGATATAGGATTCTGTTATG	1507	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15779.3	2898	2e-24	2787 - 2846	100	60 / 60	plus	ABC06842 ABC06843
MLOC	MLOC_15779.2	2761	2e-24	2657 - 2716	100	60 / 60	plus	ABC06842 ABC06843
MLOC	MLOC_15779.1	2754	2e-24	2589 - 2648	100	60 / 60	plus	ABC06842 ABC06843
JLOC1	JLOC1_10841.2	3102	8e-25	2808 - 2867	100	60 / 60	plus
JLOC1	JLOC1_10841.1	2848	8e-25	2554 - 2613	100	60 / 60	plus
Harvest21	ABC06842	1623	3e-25	1508 - 1567	100	60 / 60	plus	ABC06842
Harvest35	U35_17136	1623	3e-25	1508 - 1567	100	60 / 60	plus

Contig Sequence (1623 bp)

>U35_17136 1623 Hv_44K_v2
GGAGTCCACTTGCTCAGCCACACCGTCCTCGGATACCAGTAAGCGTGGCCAAATGGCCCT
GAAGATGAGATCCCTATCGATGAAGGTGACAAGAAGCAAGGCCGGCAAACAGGTCTGCTT
GTAGGGGTGGCTGGTGGCTCAATGGCTGCTGGTTCATGTATACTTTTCGCGTTGGTGTTC
TGGCTTCACAATCTCCATAAAAGAAAGGATGGTGGTACCAGTGAACCGAAAGACTTTGTA
GGGGCTCTTGCAGTAAACATAGACAGAGATTCTAACAACAACATCCATCAAGACTCTCCT
GTAGCAACTTCAGTGCTCCAGCGGCCTATCGGGACTCCTGAGAGGGCATATGGTATAAAT
AGTTCTCCAGCAAAGAAGATAAAGGGTCCCGGTGCGGCCACTTCTTATACTGGTGCTTCA
CTCCAAGTTGCTACAAACAGCTTCTGTCAAGATTCCCTCCTAGGTGAGGGTTCACTTGGT
CGTGTTTACAAGGCTGATTTCCCCAATGGAAAGGTACTTGCGGTGAAAAAGATAGACAGT
GCTGCCCTTTCCTTGTATGAAGAGGATCATTTCCTTGAGGTTGTATCAAACATTTCTCGG
CTTAGGCACCCAAACATCGTATCGCTTACGGGCTATTGCGCTGACCATGGGCAAAGGCTT
CTTGTATATGAGCACATCGGAAACGGAACGCTGCATGATATGTTGCACTTTTCCGATGAA
GCGAGCAAGAACCTTACATGGAACGCCCGCGTGAGGATTGCGCTAGGCACTGCTCGAGCT
TTGGAGTACCTGCATGAGGTGTGCCTTCCCCCTGTTGTACATAGAAACCTGAAGTCATCA
AATATCCTGCTTGATGAAGAGTGCAGCCCGCATCTGTCTGACTGTGGGCTTGCCGCCTTT
TCGCCAAATCCTGAGAGAGAGGTTTCAACGGAGGTGCTTGGCTCACTTGGATACAGTGCC
CCAGAATTCGCCATGTCAGGAACATATACTGTAAAGAGTGACGTGTACAGTTTTGGAGTA
GTGATGTTAGAGCTACTTACGGGCCGTAAGCCGCTAGACAGATCCAGGGAGAGGTCAGAG
CAGTCTCTTGTCGGGTGGGCAACCCCGCAGCTTCACGACATCGATGCGCTCGCCAAGATG
GTTGACCCAGCAATGGATGGCATGTACCCTGCAAAATCGCTCTCCCGTTTCGCCGACATA
ATCGCGTTGTCTGTCCAGCCGGAACCGGAGTTCCGTCCACCGATCTCCGAGGTCGTCCAG
CAACTTGTGCGTCTGATGCAGAGGGCTAGCATGTTAAGACGGCAGTCGGGAGACGATCTA
GGGTCTTCGTACCGTGCCCCGGAGCGTGAAGGAGGCGCGTCGGACGCCTTGTGAGGCCAA
ACCCTCCTGCCAGCTATAAACCAGAGCTGTATTATCAGAACATACCATTTTGTGAGTATT
AGTATGTGTCACTTTTTACTCAATTTTCTGTCTGGTATTTCTGGATCTTCCGGTTATCTG
TTTGTACCGAATATGCTGGGGATTTTGTCAATGGCTTGTATAGATATAGATATAGGATTC
TGTTATGTTGATCAGTTTTAGATAAAAAAGGAAAGGAAAGGGAGAGAAATGGATTGTGAC
AAG

Homology of Contig U35_17136 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g42800.1	559	0.0	protein\|STRUBBELIG-RECEPTOR FAMILY 8 precursor, putative, expressed
Brachypodium v1_2	Bradi1g35477.1	721	0.0
Arabidopsis v10	AT4G22130.1	703	7e-174	\| Symbols: SRF8 \| STRUBBELIG-receptor family 8 \| chr4:11723733-11727331 FORWARD LENGTH=703