barSeed - Barley Seed Development Database

Probe CUST_35963_PI390587928

Source Contig U35_29127

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35963_PI390587928	Hv_44K_v2	AAGCCCAACCCAAAGTCCCACGTGCAGGAGTACTGGCGCGTCTTCGACTTCCTCTCCCAC	415	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361207	1802	2e-24	563 - 622	100	60 / 60	plus	ABC01846 ABC37511
MLOC	MLOC_11835.2	1442	2e-24	926 - 985	100	60 / 60	minus	ABC01846
JLOC1	JLOC1_7886.2	1710	8e-25	652 - 711	100	60 / 60	plus
JLOC1	JLOC1_7886.1	1291	8e-25	569 - 628	100	60 / 60	plus
Harvest21	ABC28316	642	3e-25	416 - 475	100	60 / 60	plus
Harvest21	ABC01845	1387	3e-25	154 - 213	100	60 / 60	plus
Harvest21	ABC01842	1852	3e-25	558 - 617	100	60 / 60	plus
Harvest35	U35_29127	642	3e-25	416 - 475	100	60 / 60	plus
Harvest35	U35_14773	1491	3e-25	154 - 213	100	60 / 60	plus
Harvest35	U35_14772	1781	3e-25	558 - 617	100	60 / 60	plus

Contig Sequence (642 bp)

>U35_29127 642 Hv_44K_v2
GGGGAGTGAGCGACACTTCCCCACCCCCAGCTTAGCTGCGCTACTTCACTCACTCGAGGA
AGGATGGATCCCTGCAAGTTCCGGCCGTCGAGCAGCTTCGACACCAAGACGACGACGACG
AACGCCGGGCAGCCGGTGTGGAACGACAACGAGGCGCTCACCGTGGGGCCGCGCGGGCCG
ATCCTGCTGGAGGACTATCACCTGCTGGAGAAGATCGCCCACTTCGCGCACGCCGGTCAT
CGTCCGCTTCTCCACCGTGATCCACGAGCGCGGCTCGCCGGAGACCATCCGTGACCCGCG
CGGGTTCGCCGTCAAGTTCTACACGCGCGAGGGCAACTGGGACCTGCTCGGCAACAACTT
CCCCGTCTTCTTCATCCGCGACGGCATCAAGTTCCCCGACGTCATCCACGCCTTCAAGCC
CAACCCAAAGTCCCACGTGCAGGAGTACTGGCGCGTCTTCGACTTCCTCTCCCACCACCC
GGAGAGCCTCCACACCTTCTTCTTCCTCTTCGACGACGTCGGCATCCCCACCGACTACCG
CCACATGGACGGCTTCGGCGTCAACACCTACACCTTCGTCTCCCGCGCCGGCAAGTCCCA
CTACGTCAAGTTCCACTGGCGCCCCACCTGCGGCGTCAGCTG

Homology of Contig U35_29127 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g02400.3	285	7e-100	protein\|catalase isozyme A, putative, expressed
Brachypodium v1_2	Bradi3g01470.1	497	2e-96
Arabidopsis v10	AT1G20630.1	492	5e-88	\| Symbols: CAT1 \| catalase 1 \| chr1:7146812-7149609 FORWARD LENGTH=492