- Probe CUST_35789_PI390587928
- Source Contig U35_49555
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_35789_PI390587928 | Hv_44K_v2 | AAGGTCGTCGACCTCTAGCATCTAGTATTATTAGTTGCTCACGTACGCAGCTACTGCTTT | 350 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_33244.1 | 555 | 2e-24 | 64 - 123 | 100 | 60 / 60 | minus | ABC09843 ABC09844 ABC38691 |
| JLOC1 | JLOC1_21559.1 | 518 | 8e-25 | 108 - 167 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC51339 | 468 | 3e-25 | 351 - 410 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_49555 | 468 | 3e-25 | 351 - 410 | 100 | 60 / 60 | plus |
Contig Sequence (468 bp)
>U35_49555 468 Hv_44K_v2 ATATCAAGCAGAGCTAGCCATAAAGATAGACCATGGCGGATGGAGGTGTGTGGGTGTTCC GGAAGGACGGGGTGATGGAGCTGGAGAACGCGGCCGGGGCGGCGTCGAGCCGGAGCGGAC CGGGCAACAGGGCGCTGGTGTACGTGCCGGAGAACGAGACGATGCGGTCGCTGCAGGCGC TGGAGCAGCGCCTCGGCGCGCACGGCTGGGAGCGCTACTACGAGAACCGCGACGTCGTGC AGCTCCACCGCCGCGACGGCAGCCTCGACCTCATCTCCCTCCCGCGGGATTTTTCGCAGT TCCGTTCCACCCACATGTACGACGTCGTCGTCAAGAATCGAGGCCACTTCAAGGTCGTCG ACCTCTAGCATCTAGTATTATTAGTTGCTCACGTACGCAGCTACTGCTTTCCCGGCCAGT TAGGCTTGCAACCCTAAGCTCTGTGTTGTATCGTTGTGACTATTACTA
Homology of Contig U35_49555 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |