barSeed - Barley Seed Development Database

Probe CUST_35788_PI390587928

Source Contig U35_49556

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35788_PI390587928	Hv_44K_v2	TCTCTACACGCACAAACAATAACAACAAAAGGGAAGCCAAACACAAACCAAGACAGATAA	65	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16988.1	2448	2e-24	790 - 849	100	60 / 60	plus	ABC14396
MLOC	MLOC_16988.2	2097	2e-24	343 - 402	100	60 / 60	plus	ABC14396
JLOC1	JLOC1_11731.1	2255	8e-25	501 - 560	100	60 / 60	plus
Harvest21	ABC51340	407	3e-25	66 - 125	100	60 / 60	minus
Harvest35	U35_49556	407	3e-25	66 - 125	100	60 / 60	minus

Contig Sequence (407 bp)

>U35_49556 407 Hv_44K_v2
GATGTCTGATGCAATGAATAGTTTAAACAATCTATCTTTTGTGCACTATGATATTTTCAT
TTGTATTATCTGTCTTGGTTTGTGTTTGGCTTCCCTTTTGTTGTTATTGTTTGTGCGTGT
AGAGATGTAGAAATTAATTTCCTTTGTTTTGTCAATGTTGCTGCAGTTCTTTGTGAACTT
ACTGCAGGTTAGTAGTGGCTTAACGACCTGAAGTTTTGCTTGGTTCCACTCCTAATTACC
AATTAATAGTTTCACAGGGGCTTTGTGAGGATCAGCACGAAAACGAAGGGAGGCTGATTG
TGAAGAACTGGTGGCTTGGGACCTTTGGCTCTGCATGTTTTTTTTTTGGGTAATGCATGT
GGGTTAATTTGCTATAAAATGTAACTGAGACCTGAAACTGTTGTTGG

Homology of Contig U35_49556 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None