barSeed - Barley Seed Development Database

Probe CUST_35784_PI390587928

Source Contig U35_1567

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35784_PI390587928	Hv_44K_v2	CGCGCATATGTGTGTCTATGTATTTTTACTTTGTACCAAATCTTTATGGTATACTATCCC	453	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_47606.1	530	6e-24	472 - 530	100	59 / 59	plus	ABC00077 ABC00195 ABC12818
JLOC1	JLOC1_30674.1	639	8e-25	520 - 579	100	60 / 60	plus
Harvest21	ABC00267	563	3e-25	454 - 513	100	60 / 60	plus
Harvest21	ABC00195	998	3e-25	39 - 98	100	60 / 60	minus	ABC00195
Harvest35	U35_1567	565	3e-25	454 - 513	100	60 / 60	plus

Contig Sequence (565 bp)

>U35_1567 565 Hv_44K_v2
GGAGGTATCGACTATTGTTTCCTTTTGTTGTTCTTGTGATCTTCGGTTGCGAGAAGAAGT
CAAGGGAAACACGTTCAATGGCACGGGGAACCATCGTACCCACCCTTCTAGTGTTTCTTC
TGGCCGTTTGCTGTGCAACCTCCGTTGTGCATGGCAAAGAGTGGACAGTCGGTGACAACA
AGGGATGGAGCTTCGGCGTCTCCGGTTGGGAGAATGGCAAGCGCATCCAGTCCGGCGACG
TGCTTGTGTTCAAGTACAACCCGAGTATGCACAACGTGGTGCAGGTGGGAGAAGCCGACT
ACAACTCATGTACGGTTTCTGGCCCGTCGAGGGCTTACACCTCCGGCAATGACCACATCC
AGCTTGCCCGCGGTGGCAAAGCATTCTTCCTCTGCAGTGTTCCGGGCCACTGCCAGAAGG
GCATGAAGATCGCTGTCACTGCTTAATTGATCTCGCGCATATGTGTGTCTATGTATTTTT
ACTTTGTACCAAATCTTTATGGTATACTATCCCATGATAAATTGGTGATAGAAGAAATCA
ATTGATCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_1567 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None