barSeed - Barley Seed Development Database

Probe CUST_35768_PI390587928

Source Contig U35_403

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35768_PI390587928	Hv_44K_v2	TGTACCAGGAGATCTGCTGCATTGCCATCGACACATCGCCATGGATCAGTCCGGGGACAA	1127	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK253026.1	1501	2e-24	1111 - 1170	100	60 / 60	plus	ABC01244 ABC01246 ABC01247 ABC01249 ABC31028 ABC48413 ABC48525
MLOC	MLOC_59149.2	1755	2e-24	1497 - 1556	100	60 / 60	plus	ABC01244 ABC01246 ABC01247 ABC01249 ABC48413
MLOC	MLOC_59149.3	1292	2e-24	959 - 1018	100	60 / 60	plus	ABC01244 ABC01246 ABC01247 ABC01249 ABC48413 ABC48525
MLOC	MLOC_59149.1	1848	2e-24	1452 - 1511	100	60 / 60	plus	ABC01244 ABC01246 ABC01247 ABC01249 ABC48413 ABC48525
JLOC1	JLOC1_38466.2	1836	8e-25	1363 - 1422	100	60 / 60	plus
JLOC1	JLOC1_38466.1	1305	8e-25	832 - 891	100	60 / 60	plus
Harvest21	ABC01260	915	3e-25	567 - 626	100	60 / 60	plus
Harvest21	ABC01254	1509	3e-25	1102 - 1161	100	60 / 60	plus
Harvest21	ABC01252	445	3e-25	282 - 341	100	60 / 60	minus
Harvest21	ABC01244	989	3e-25	576 - 635	100	60 / 60	plus	ABC01244
Harvest35	U35_29246	735	3e-25	540 - 599	100	60 / 60	plus
Harvest35	U35_403	1205	3e-25	1128 - 1187	100	60 / 60	plus
Harvest35	U35_26	987	3e-25	576 - 635	100	60 / 60	plus

Contig Sequence (1205 bp)

>U35_403 1205 Hv_44K_v2
TCGAGCACTGTTGGCCTCACTCGCACAGGCACAGCTCCAACCAGTCTAGCCGATCAGACA
CGCTCTCCTCGCCGCCAAGATGTTCGGGTTCGGGCACCACCACAAGGACCAGGCGCCGGC
GGCGTCCGGCCCCAACCAGATCTTCAAGATCTACTGCCGGGCCTCCGAGGACTACTGCCT
CGCCGTCCGCGACGGCGAGGTCGTGCTCGCCCCCGTCAACCCCAAGGACGAGACCCAGCA
CTGGCTCAAGGACATGCGCTTCAGCACCACCGTCAAGGACGAAGAGGGCATGCCGGCCTT
CGCGCTCGTCAACAAGGCCACCGGCCTCGCCGTCAAGCACTCCATCGGCCAGTCCCACCC
CGTGAAGCTGGTGCCGTTCAACCCGGCGTACGAGGACGCATCGGTGCTGTGGACGGAGAG
CAAGGACGTGGGCAAGGGCTTCCGCTGCATCCGCATGGTCAACAACACCCGCCTCGGCTT
CGACGCCCTCAACGGCGACAAGGACCACGGCGGCGTGCACGACGGCACCACCGTCGTGCT
CTGGGAGTGGTGCAAGGGGGACAACCAGTGCTGGAAGGTCTGGCCGTGGGCCGAGGCGCA
CGCCGCCGTCGAGTCCGGCGCCACCATGGGCAACAACCCCCACGCCATGGGCGGCGGCCC
GCCCGTGCACGCCGTGCGCGTCTTCTGCAAGGCCGGCGAGGACTACAGCCTCACCGCCCG
CAACGGTACCGTCTGCCTCGCCCCCACCAACCCCAGGGACGACTACCAGCACTGGATCAA
GGACATGAGGCACAGCAACAAGATCAGGGACGAGGAAGGGTACCCTGCGTTCGCGATTGT
GAACAAGGTCACCGGCGAATGCATCAAGCACTCCACCGGCCAGGGCCACCCCGTGAAGCT
GGTGCCGTACAACCCGGCGTACCAGGACGAGTCGGTGCTGTGGACGGAGAGCCGCGACGT
GGGCAAGGGCTTCCGCTGCGTGCGCATGGTGAACAACATCTACCTCAACTTCGACGCCTT
CCACGGCGACAAGGCCCACGGCGGCGTCCACGACGGCACCGAGGTCGTGCTCTGGAAGTG
GTGCGAGGGCGACAACCAGCGCTGGAAGATCCTCCCCTGGTAGATGCTGTACCAGGAGAT
CTGCTGCATTGCCATCGACACATCGCCATGGATCAGTCCGGGGACAAGCCCCCCCGAGTC
GTCGT

Homology of Contig U35_403 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g48490.2	344	0.0	protein\|stress responsive protein, putative, expressed
Brachypodium v1_2	Bradi1g17460.1	346	0.0
Arabidopsis v10	AT2G39050.1	317	5e-61	hydroxyproline-rich glycoprotein family protein \| chr2:16303427-16305336 FORWARD LENGTH=317